Aythya fuligula (tufted duck): 116489962
Help
Entry
116489962 CDS
T07966
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful04140
Autophagy - animal
aful04148
Efferocytosis
aful05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116489962 (VPS39)
04148 Efferocytosis
116489962 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
116489962 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aful04131
]
116489962 (VPS39)
Membrane trafficking [BR:
aful04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
116489962 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Hira
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
116489962
NCBI-ProteinID:
XP_032044656
UniProt:
A0A6J3D040
LinkDB
All DBs
Position
5:complement(34212044..34234019)
Genome browser
AA seq
886 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDMVPGEVLSSESVCCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCA
LNWTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASN
HFVWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLA
IPYLEHIIHVWEEIGADFHNCLIQLYCEKVQGLMKEYLHSLPADKTPVPAGEEGGDLGDY
RKKLLLFLEKSSCYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAE
NYCHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHS
KLDTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcatgtgccgatcctggagaagctgccgctgcagatcgactgc
ctggcggcctgggaggaatggctccttgttggtaccaaacaagggcatcttcttctttac
aggatcaagaaagacatggtgccaggagaggttttgtcatcagaaagtgtctgttgcaat
aggtttgaagtgacgctagagaaatccaacaagaacttctcaaaaaagattcaacagatt
catgttgtttctcagtttaaaattctggtcagtctgttagaaaataacatttatgtccac
gacctgttgacatttcaacaaatcactacagtttccaaggcaaaaggtgcatctctcttc
acttgtgatcttcagcattcagatacaggggaagaggtgctgagaatgtgtgtggcagtg
aggaagaagctacaactttatttttggaaggacagagagttccatgaactacagggggac
ttcagtgtacctgatgtacccaagtctatggcctggtgtgaaaattctatctgcgtgggt
tttaagagggactactatctgatacgggtggatggaaaaggatccatcaaagaactcttt
ccaacggggaagcagttggaaccactggttgcccctgtggcagatggaaaagttgcagtt
ggtcaagatgatctaactgttgtgctcaatgaagaaggggtctgtacccagaaatgtgcc
ttgaattggacagatattcctatagccatggagcaccagcctccctacatcattgctgtt
ctgccgaggtatgtggagatccgcacgtttgaaccccgactgctggtacagagtattgag
ctacagagaccacgcttcatcacctctggagggacaaatattatatatgtggcaagtaat
cactttgtttggcggctcatcccagtgtccatagccacacagatccagcaacttcttcag
gataaacaatttgagttggctttgcagttggcagaaatgaaagatgattcagatagtgag
aagcgacaacaaatacaccacatcaagaacctctttgccttcaacctcttctgtcagaag
cgctttgatgaatccatgcaagtttttgccaaacttggtacagatcccactcatgtgatg
ggtctgtatcctgacctcctgcccacagattacaggaaacagctacagtatcccaacccc
ctgccagggctctcaggggcagagctggagaaggcacatttagctctgatagactaccta
actcaaaaaagaagtcaactggtaaagaagctaaatgattctgaccatcagtccagtact
tcgcccctcatggaaggaacacccacaatcaaatccaaaaagaagctgctacaaatcatt
gataccacactattgaagtgttacctccatacaaatgtagcacttgtggcacccttgcta
cgtctggagaacaatcactgccatattgaggagagtgagcatgtactaaagaaggcacat
aaatacagtgagctgataatactgtatgagaagaaaggtttgcatgagaaagcattacag
gtactggtggatcagtcaaagaaagccaactcacctttgaagggtcatgagaggacagtg
caatatctgcagcatttgggcacagagaacttgcacttagtattttcttactctgtctgg
gtgttaagagattttcctgaagatggactgaagatatttacagaagacctccctgaagtg
gaagctttgccacgagataaagtgctcagtttcttgatagaaaacttcaaaagtttggct
attccttatctggaacacatcattcatgtgtgggaagaaattggtgcagactttcacaat
tgtctgattcagctgtactgtgagaaagtgcagggcttaatgaaagaatatctccattct
ttacctgcagataaaactccagtgcctgctggggaggaaggaggagacttaggggattac
cggaaaaaacttcttctttttttggagaagtctagctgttacgaacccagtcgactaatt
agtgactttccctttgatggtcttctagaagaacgtgctctgctcttgggtcgtatgggg
aagcacgagcaagctctgtttatttatgttcatattttgaaggacaccaacatggccgaa
aactactgccataaacattacgacagaaacaaagatggcaacaaagatgtctatctatca
cttctccggatgtatctctccccacctagtgttcattgcctagggccaatcaagatggaa
gtgctggagcctcaagccaatctgcaggctgctctgcaggtgttggagctgcatcacagc
aaactggataccaccaaggcaataaaccttctaccagcaaatacacagattagtgagatt
cgaatcttcctagagaaagtccttgaagaaaatgcccaaaagaagagattcaatcaagta
ctcaagaatcttctccatgctgaatttctgagggtccaggaggagcgaattttgcatcag
caagtgaagtgcataattacagaggagaaggtgtgcactgtatgtaaaaagaagataggc
aacagtgcatttgcccgataccctaatgcaatagttgtgcattatttctgctccaaagaa
gtcaacacattggacacctga
DBGET
integrated database retrieval system
