Aythya fuligula (tufted duck): 116490523
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Entry
116490523 CDS
T07966
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116490523 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aful03041
]
116490523 (SF3B1)
03036 Chromosome and associated proteins [BR:
aful03036
]
116490523 (SF3B1)
Spliceosome [BR:
aful03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116490523 (SF3B1)
Complex B
116490523 (SF3B1)
Complex C
U2 SnRNP specific factors
116490523 (SF3B1)
Chromosome and associated proteins [BR:
aful03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116490523 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
116490523
NCBI-ProteinID:
XP_032045653
UniProt:
A0A6J3D7W2
LinkDB
All DBs
Position
6:1425766..1448194
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGASSQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgac
caagaaatctatggtggcagtgacagcaggtttgctggatatgtaacttctattgcagca
acagaattggaagatgatgatgatgactacccttctacaagcttgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacatcccacagtcaactgaacagtat
gatccttttgcagaacaccgtccgcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
acaccagatcctaaaatgaatgccagaacatacatggatgtcatgcgtgaacagcattta
acaaaagaagagagggaaattaggcagcagctagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagcctcatctcagccaccttcaaaacgcaagcggcgttgggatcag
acagctgatcagacccctggtgctacaccaaaaaaattatccagttgggatcaagcagag
actcctggacatacaccatctctgcgctgggatgaaaccccaggccgtgcaaagggtagc
gaaactcctggtgccaccccgggctcaaaaatatgggatcctactcccagtcatacacca
gcaggggctgcaacacctggacgggacacacctggtcatgcaacaccaggccatggaggt
gccacttccagcgcacgtaaaaatcgatgggatgaaacacctaaaacagaaagagatact
ccgggacatggcagtggatgggctgagactcctcgtacagatagaggtggtgattccatt
ggtgagacaccaaccccaggagcaagtaaaagaaagtcacgatgggatgaaacacctgct
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaactccgacaccaggtcatatcatgagcatgactcctgaacagctg
caggcttggcgttgggagagggaaattgatgagagaaacagaccactttctgatgaggaa
ttggacgctatgttcccagaaggatataaggttcttcccccaccagctggttatgtaccc
attcgcactccagcccgtaagcttacagcaactccaacgcctttgggtggtatgactgga
ttccacatgcagaccgaagaccgcactatgaagagcgtcaatgaccagccatctggcaat
cttcctttcctaaaaccagatgatatccaatactttgataaacttctggttgatgttgat
gagtcaactctgagtcctgaagaacagaaggagaggaagataatgaaattacttctgaaa
ataaagaatggcacacctcccatgagaaaggctgctttgcgacaaataactgataaagct
cgggaatttggagcaggaccgttgtttaaccagattctgcctctgctgatgtcaccaaca
cttgaagatcaggagcgtcacttgcttgtcaaagtcatagacagaattctctacaaactg
gatgacttggtccgaccatatgtacacaagatccttgttgtcattgaaccactgctgatt
gatgaagactattatgccagagtggaaggcagagaaattatttcaaacttggcaaaggct
gctggtttggcaacgatgatctctacgatgcgtcctgatattgataatatggatgaatac
gtccgaaacacaacagctcgagcctttgctgttgttgcctctgctttgggcattccttct
ctgttaccgttcttgaaagctgtctgtaaaagcaaaaagtcctggcaggctaggcatact
ggcatcaagattgtgcagcaaattgctattcttatgggttgtgctatcttgcctcatctc
agaagcttggttgaaattattgaacatggtcttgtggatgagcagcagaaagttcgtacc
atcagtgctttggctatcgctgccttggctgaggcagctactccctatggtattgagtca
tttgattctgttctgaagcctttatggaagggtatacgtcagcacagaggaaagggtttg
gctgcctttttgaaggctattggttatctgatcccacttatggatgctgagtacgcgaac
tattacaccagagaagtcatgctaattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtattgaaggtggtcaagcagtgttgtggtacggatggtgttgaagca
aactacattaaaacagagatcctgccaccatttttcaaacacttttggcagcacagaatg
gcattggacaggagaaattacagacagttggttgatacaacagtggagctggcaaataaa
gttggagcagctgaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggtcatggaaacaattgagaagataatgggaaatctgggtgcagcagac
attgatcataaactggaagaacaacttattgatggtatcttgtatgcctttcaagaacag
accacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaa
agagttaagccctacttgccacagatctgtggtactgttttgtggcgtttgaacaacaaa
tcggctaaagttcggcagcaggctgctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacatttgggagttgtgttgtatgagtacctgggt
gaagaatatcctgaagtattgggcagcatacttggagcacttaaagctattgtgaatgtt
ataggtatgcacaagatgacaccacctatcaaagatctgctgccacggcttacgcctatt
ttgaagaacagacatgagaaagtacaggagaattgtattgatcttgttgggcgaattgca
gatcgaggtgcagaatatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattattaaaagctcacaagaaagctattcgaagagccacagtaaacacctttggttat
attgcgaaagctattggacctcatgatgtattggctacactgctaaataacttgaaagta
caggaaagacagaacagagtatgtactacagtagcaattgctattgtagctgaaacatgc
tcccctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatggggaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatcttgta
cacaggcaaacagccagtgccgtggtgcagcacatgtctctcggtgtctatgggtttggc
tgcgaagattctcttaatcatttgctaaattacgtatggcctaatgtgtttgaaacctcc
ccacacgtcattcaggcggttatgggagctctggagggcctcagagttgctatcggtccg
tgcagaatgttgcagtattgtttacagggtttgtttcaccctgcccggaaagtcagagat
gtctattggaagatttataattccatctatattggatcacaggatgctctgatagcacat
tatccaagaatctataatgatgaaaagaacacctatattcgttatgagcttgactacatc
ttataa
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