Aythya fuligula (tufted duck): 116491761
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Entry
116491761 CDS
T07966
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03013
Nucleocytoplasmic transport
aful03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116491761 (UPF2)
03015 mRNA surveillance pathway
116491761 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aful03019
]
116491761 (UPF2)
Messenger RNA biogenesis [BR:
aful03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116491761 (UPF2)
mRNA cycle factors
P-body specific factors
116491761 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
116491761
NCBI-ProteinID:
XP_032047919
UniProt:
A0A6J3DEX5
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Position
1:complement(6490469..6543482)
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AA seq
1290 aa
AA seq
DB search
MPAERKKSASMDEKESSLNNKEKEFGERRPVSTREKPKEDVKVGVKRETLKVPEDKKKKL
EEDKRKKEDKERKKKDDDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADILD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQSKDSSKDESRDSKDAKDNKDAPGSEDLELELENLDINDDPLELDCGDEAE
DLTKKLLDEQGKREGADSTGADSSDGKQAERKQEDEEASTGSHLKLIVDAFLQQLPNCVN
RDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDL
CSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHI
EMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPA
EKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVK
YNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYN
YRMVESAVIFRTLYSFTSFGVNPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKR
KLDCFLVYFQRYVWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAIRQV
QDLEREFLIKLGLVNDKDSKDSITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEG
SDNEEEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKM
MLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGSGEGESESGDTMPFVMLTRKGNK
QQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPA
PANTNRERRPRYQHPKGAPNADLIFKTGGR
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagtcagcaagcatggatgaaaaagaatcttcgttaaataat
aaagaaaaagaatttggtgaaaggcgaccagtgagcaccagggagaagccaaaagaagat
gtcaaggttggagtgaagagagagactttaaaggttcccgaagataaaaagaaaaaattg
gaagaggataaaagaaaaaaagaagacaaggagcggaagaagaaagatgatgataaagtg
aaggcagaagaagagcaaaagaagaaagaagaggaggaaaaaaagaaacttgaagaggaa
gagaaaaagaagcaagaggaggaagtgaaacgtcagcaagaagaagcagctgctcagctg
aaagaaaaagaggaagcacatcagctccatcaggaggcttgggagcgccatcaggcaaga
aaagagcttcgcagcaaaaaccagaatgcaccagacaatcgccccgaggaaaacttcttc
agcagactagactccagtctgaagaagaacacagcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccatgattttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaagccaaactgaaaatctcggatgtgaactgc
gctgtgcacttgtgttccctcttccaccagcgctatgctgattttgctccctcattactt
caggcttggaaaaaacattttgaagcaaggaaagaagagaagactcccaacattactaag
ttgagaactgatttgcgtttcattgcagagttgacaatagttgggattttcactgacaag
gaaggtttgtctttaatctatgagcagcttaaaaatattattaacgctgaccgagagtcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccaaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacaacagcccttccagaatttgttgaaggaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgcatcctgcactccaaaggagaactgagtgaagatcggcacaagcagtatgaggag
tttgcaatgtcatatcagaagctgttggccaattctcagtctctagctgatattctggat
gagaatatgcctgaccttcctcaagataaaccaactcctgaggaacatggacctggtatt
gacattttcacaccaggaaagcctggagaatatgacctggaagggggtatttgggaagat
gaagatgctagaaacttctatgagaacctcatcgacttgaaggcttttgtgcctgcaatc
ttgtttaaagataatgaaaaatgttcccagagcaaggattccagcaaggacgaatcaaga
gattccaaagatgccaaagataataaggatgcacctgggagtgaggatttggaattggag
ctggagaatttggatattaatgatgatcccctggaattagactgtggcgatgaggcggaa
gatcttacaaaaaagcttcttgatgaacaaggcaagagagagggagcagatagcaccgga
gctgacagtagtgacggaaaacaagctgaaagaaaacaagaagatgaagaagccagcact
ggatctcacttaaaacttatagtagatgcttttcttcagcagcttccgaactgtgtcaac
agagacctcatagacaaggcagccatggatttctgcatgaatatgaatacaaaagccaac
cgaagaaaactagtgcgagcccttttcatagttcctaggcaaaggttggatttgctacca
ttctatgcaaggctggttgccacgttgcatccctgtatgtctgatgtagcagaggatctt
tgttccatgctgaaaggggatttcagatttcatgtaagaaaaaaggaccagatcaacatt
gaaacaaagaataaaactgtgagattcattggtgagcttaccaagtttaagatgttctcc
aaaaatgatactctccactgcttaaagatgcttctgtcagacttctctcatcaccacatt
gaaatggcatgtactctgttggaaacctgtggaagattcctcttcagatcaccagaatct
cacttgagaaccagcgttcttttggaacaaatgatgagaaagaaacaagcaatgcatctt
gacgcccgctatgttacaatggtggaaaatgcctactactactgtaatccccctccagct
gaaaaaactgtgaagaaaaaacgtcctccattgcaggaatatattcgtaagcttctctac
aaagatctctcaaaggtcaccacagagaaggtcctgagacagatgcgcaagctgccttgg
caggatgcagaagtaaaagattacgttatatgctgcatgatcaacatctggaatgtgaaa
tataatagtattcactgtgtagccaacctcctagcagggttggtcctttaccaggaagat
gttggaattcatgttgtggatggagtactagaggatattcgactaggaatggaggttaac
cagccaaagtttaaccagcggcggatcagcagtgccaagtttttgggggagctttacaat
tatcgaatggtggaatcggctgtaatatttcgaactctatattcattcacatcgtttggt
gtgaaccctgatggtagtcctagtccactggatcccccagagcatcttttcagaatcaga
ttagtctgtacgatccttgatacctgcgggcaatattttgacagaggatccagcaaacga
aaacttgattgcttccttgtgtacttccagcggtatgtttggtggaaaaaaagtctggat
gtctggacaaaagaccacccatttcctatagacattgactatatgatcagtgatacactg
gaactcctgagaccaaagataaaactctgcaattctctggaagaagctatcagacaggtt
caagacttggaaagagaattcttaataaaattagggcttgtgaatgacaaagattccaaa
gattccattacagaaggagagaatctggaagaggatgaagaagaagaagaaggtggagca
gagacagaggaacaatctggaaatgaaagtgaagtaaacgagccagaagaagaggagggt
tctgacaatgaggaagaagaaggtgaagaagaggaggaagaaaacactgattatcttaca
gactccaataaggaaaatgaaactgatgaggagaatacagaagtaatgattaaaggagga
ggtcttaaacatgttccttgtgcagaagatgaggacttcattcaggcattggataaaatg
atgctggaaaatcttcagcaacggagtggtgaatcagttaaagtacatcagttggatgtg
gctattcccctacacctcaaaagtcagctgaagaagggtcccccacttggaagtggagaa
ggggagtcagagtctggagacacaatgccgtttgtcatgttaacacgaaaaggcaacaaa
cagcagtttaagatcttaaatgtgccgatgtcttcccaacttgctgcaaaccactggaac
caacagcaggctgaacaggaggagagaatgcggatgaaaaagctcactttggatatcaac
gaacggcaagaacaagaggactaccaggaaatgttgcagtctctggcacagcgtccggct
ccagcaaatacaaatcgtgaacggcgtcctcgttaccagcatccgaagggagcacctaat
gcagatctaatctttaaaactggtgggaggtag
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