Aythya fuligula (tufted duck): 116491942
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Entry
116491942 CDS
T07966
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1
KO
K06527
vascular cell adhesion molecule 1
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
116491942 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
aful04515
]
116491942 (VCAM1)
04090 CD molecules [BR:
aful04090
]
116491942 (VCAM1)
04091 Lectins [BR:
aful04091
]
116491942 (VCAM1)
Cell adhesion molecules [BR:
aful04515
]
Immunoglobulin superfamily
VCAM
116491942 (VCAM1)
CD molecules [BR:
aful04090
]
Proteins
116491942 (VCAM1)
Lectins [BR:
aful04091
]
I-type lectins (Siglecs)
116491942 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
ICAM_N
C2-set
C1-set
C2-set_2
Ig_5
Ig_6
ICAM1_3_5_D2
Receptor_2B4
Herpes_gE_N
Ig_VEGFR-1-like_5th
DUF2808
Syndecan
Motif
Other DBs
NCBI-GeneID:
116491942
NCBI-ProteinID:
XP_032048202
UniProt:
A0A6J3DFL6
LinkDB
All DBs
Position
8:28922253..28928798
Genome browser
AA seq
538 aa
AA seq
DB search
MGRINQAVLIILYVLITVKAFEMEIIPASRIVVQIGEMLVLTCNTTGCASPSFSWRTQMD
HPLGGTVNNYGTYSTLTMNPVSVENSNDYLCTAFCNEKGKKEKSIKVELYSFPSDPVIEI
STSLVAGEPATVICKIPDVFPSDHLEVLLMKEGHTLHEKHFLDDDSRNKETKTVTYSFNP
TTEDIGKEITCVAKLPIATMDFEPKERVTSLKLNANFGPQNTIITVSPSNFTVEGNPLKL
TCVTESNPPAQVVWSKHLADGNIEHFIENNVLSIPHARFTDSGLYICEVINLVTNKTEKA
TVDIFIQAPPKNTTLSIFPSSVVKQGESVTISCTSADVPAVQITLRKKTGDVITTLETED
GKYTIDKAQLKDAGIYECISINKLGKQSQHIVLDVKVPPQNITVLVYPSENVKEGENVTI
TCSTYSNPPSQMVLKKVHQEREIILPSVNGTFTLYNVTKNDTGKYLLDVFNEVGNNIKVI
EIAVIGKLEKRHQMMPLIIAFSCTTAIAIPVVAILIYVSRKAKINGSYSLVKALRLKV
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaataaaccaagctgtgctaattattttgtatgtgttaataactgttaaagcc
tttgaaatggagattatacctgctagcagaattgttgtacagattggagaaatgctcgta
ctcacatgcaatactactggctgtgcatcaccaagtttttcatggagaacccaaatggac
caccctcttggaggaacagtgaacaactacgggacatactctaccttgactatgaatcca
gttagtgttgagaattctaatgattacctgtgtactgccttctgcaatgaaaaagggaaa
aaggagaagagtatcaaagttgaactttactctttccccagtgatcctgtcattgagatc
agcacatcattagttgccggggaaccagccactgtcatctgtaaaattcctgatgtgttt
ccttctgatcacctggaagtactcttaatgaaagagggacacactcttcatgagaaacat
ttcttggatgacgacagcagaaataaagaaacaaaaactgtgacatactcatttaacccc
acaactgaagatattgggaaagagattacttgtgtggccaaattgccaattgctaccatg
gactttgagcccaaagaaagagttacttctctgaaactgaatgcaaactttggtccacaa
aatactatcattactgtatctccaagcaactttacagtggaaggcaaccctctaaaactc
acttgtgtgactgagagtaatccaccagcacaagtagtttggagcaaacatctggctgat
ggaaacattgagcattttatagaaaacaatgtcctttctattcctcatgctcgtttcact
gactcaggactgtacatctgtgaagtaattaatcttgtaactaataaaacagaaaaagca
acagtcgacatttttatacaagcgccaccaaaaaatacaacactttcaattttcccttca
agtgtggtgaagcaaggagaaagtgttaccatctcttgcacatctgcagatgttccagct
gttcagattaccctgaggaagaaaacaggtgatgtgatcacaacccttgaaacagaagat
ggcaaatacaccatagacaaggctcaactaaaggatgcaggaatatatgaatgcatatcc
attaacaaacttggaaagcagtctcaacacatagtacttgatgtcaaagttcctcctcaa
aatattaccgtgttagtatatccatcagaaaatgttaaagaaggagaaaatgtcactata
acatgtagcacatacagtaacccaccatcacagatggtcctgaaaaaagttcaccaagag
agagaaattattctgccatcagtgaatggaacctttacactctacaatgtcaccaaaaac
gatacaggcaaatatttgcttgatgttttcaatgaggttggaaacaatatcaaagtgata
gagatagctgttataggaaaattggaaaaaagacatcaaatgatgccactgattattgca
ttctcttgcacaacagcaatagcgatacctgtggttgcaattttgatctacgtgtcaaga
aaagcgaagataaatggatcctacagtcttgttaaagcactgaggctgaaagtgtga
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