Aythya fuligula (tufted duck): 116492113
Help
Entry
116492113 CDS
T07966
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful04382
Cornified envelope formation
aful04510
Focal adhesion
aful04512
ECM-receptor interaction
aful04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116492113 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116492113 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116492113 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116492113 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aful04147
]
116492113 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
aful00536
]
116492113 (COL4A1)
Exosome [BR:
aful04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116492113 (COL4A1)
Glycosaminoglycan binding proteins [BR:
aful00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116492113 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116492113
NCBI-ProteinID:
XP_032048473
UniProt:
A0A6J3DGE7
LinkDB
All DBs
Position
1:complement(145563462..145691550)
Genome browser
AA seq
1669 aa
AA seq
DB search
MWLWLGFGLLLSAELDTVAAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGPSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLFPPSVLKGDKGVPGQPGLPGPPGTA
GFQGPMGPPGLPGEPGPPGPPGPPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPSPHAK
EKGSEVIKGEKGEQGQKGEQGTPGLPGSAFRGEKGEPGAPGPQGKPGKDGEPGPKGQPGL
PGGFGIPGRPGEPGAKGEKGDRGPQGPPGRVIDTGPMDAFGEKGDPGVSGLPGQKGQKGE
KGFPGLQGIPGTPGRPIPDRVGSPGVPGQRGEKGEKGSPGFPLPGPPGRDGYPGPPGLPG
PPGPPGVTDGIDQCQQGQPGAPGIPGPPGQHGFPGEMGEKGEKGETCTLCDKVGPPGLPG
PQGPPGPAGFPGQSGFKGDRGLPGLEGLPGLPGPPGAPGLIGAPGAKGEPGDFSFDSILK
GEKGDPGFPGQPGIPGREGTPGKDGLPGPQGPKGASGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGTAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTIPLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGIPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDG
LPGTPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGLPGTPGAPGVGPQGLPGPAGQPGPQGPPGFPGIKGERGFPGIPGLDMPG
PKGDKGSQGQPGVPGSVGLPGLPGPQGSVGLKGSEGAKGEMGVMGTPGLPGTPGPVGDRG
LPGEKGSPGFKGVVGPQGDPGVKGDKGEAGLPGVPGSMDTMDMVSLKGQKGDPGEKGDHG
PTGEKGLRGEYGEPGIPGKDGEPGTPGHPGPKGDQGPPGFPGEPGIPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRTGSPGLSGD
KGEKGNIGIPGIPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPGV
PGPAGSIGQKGEPGYDGIPGAAGAKGEQGFPGRGFPGSPGAKGDKGAKGDVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGNQGLPGLPGIAMEGPKGDRGPQGQPGLPGLPGPMGPPGPPG
LKGAKGEQGSEGWPGTPGGPGVKGDPGFQGLPGSPGLPGDIGQKGDLGPPGVPGVPGPKG
SPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLIKGEPGLPGPVGPVGLKGFPGLPGPK
GQQGMTGPSGVPGPPGSPGFDGKPGQKGEVGPYGPPGPRGFPGPPGPEGLPGAMGPPGAA
SVAHGFLVTRHSQTIEEPLCPSGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgtggctgtggctgggcttcgggctgctgctcagcgcagagctcgacaccgtcgccgcc
gcgggttgttccggttgtggaaaatgtgactgcagtggagtaaaagggcaaaagggagaa
agaggcttaccgggtctacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
cctcctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaaa
ggaacaagaggcccaccaggaccatcaggatttccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggaacaaagggt
gaaagaggtccagtaggtcccccagggttaccaggactgactgggagcataggaccccca
ggacctcctggaatgaagggagatccaggtgaagtgattggtctttttcctcctagtgtg
ctaaaaggtgataaaggcgttcctggccaacctggactacctggtccacctggaactgcg
gggtttcagggaccaatggggccaccagggcttccaggcgaaccaggtcccccagggcca
ccaggacctccaggcgagaagggctacatgggtttgggctttcagggtccaaaaggtgaa
aagggagaacaaggagtccgtggtcccccagggccaccaggaccttcaccacacgcgaaa
gaaaaaggaagcgaagtcataaagggagaaaagggtgaacaaggtcaaaagggagaacag
ggaaccccaggattgccaggctcagctttcagaggagaaaagggtgaacctggggcgcct
ggtccacagggaaagcctggaaaagatggcgagccaggaccaaaaggacaacctggtttg
cctggagggtttgggattccgggacggcctggggaacctggtgctaagggtgaaaaaggt
gatcgaggtcctcaaggtcctccaggaagagttatagatactggaccaatggatgctttt
ggtgaaaagggagaccctggagtttcaggtttgcctggacaaaaaggtcaaaaaggtgaa
aaaggttttcctggattacaaggaatcccaggaactccaggtcgaccaattccagacaga
gtaggatcacctggtgtccctggacagagaggtgaaaaaggtgaaaagggttctcctgga
ttccctttacctggaccccctggaagagatggttacccaggtcctcctgggctccctggc
cctccaggtcctccaggtgtaacagatggaattgatcaatgccaacaggggcaacctggt
gcaccaggtatacctggacctccagggcaacatggatttccaggagagatgggagagaaa
ggtgaaaaaggagaaacctgtactttatgtgataaagtaggacctcctggacttccagga
ccacaaggaccaccaggtccagcaggttttccaggacaatcaggtttcaagggtgacaga
ggcttacctggacttgaaggccttccagggttacctgggcccccaggtgctccaggactt
atcggcgcccctggggcaaaaggagaaccaggagatttttcttttgattctatcctgaaa
ggtgaaaagggagatcctggtttcccaggacaaccaggtattcctggaagagaaggaaca
ccaggaaaagatggattgccaggtccacagggtccaaaaggagcatcgggtacagctggc
ttgaaaggagaacgtggtccccctggccaacctggattccctggagtacgtggtgaaaga
ggttttcctggccctcctgggataggcactgcagggctacctggtgacaaaggagacaga
ggctttgctggaaccccaggtttaccaggccttccaggggcaaagggtgaagcaggacga
actataccgctccctggacctcctggggcagatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccagggatacctggcctgccaggagaa
aaaggtgctgttggacagccgggtatagggttccctgggcctccgggacccaaaggtttt
caaggtcagcctggctcacctggtctaccggggactccaggaactcctggcctggatggt
ttgccaggtacaccaggtttacaaggtcaaaaaggtgaacctggtgtaggtctccctggc
cctaaaggattaccaggccccccaggcccagctggcatccctggagaaaagggaaatcca
ggactgcctggcttacgtggcgagcaaggattcccaggcatacctggacagcaaggattc
agaggtgaccctggcctcccaggactgcaaggcttgccaggcaccccaggtgcaccaggg
gtgggcccacagggattgccagggcctgctggacagccaggaccccagggaccaccagga
tttcctggaataaaaggagaaaggggtttccctggtatcccgggtctagatatgccagga
ccaaaaggcgataaaggtagccagggccagcctggagtaccagggtctgtggggttacct
ggcctgccgggtccacaagggtctgttggactgaaaggatcagaaggagccaaaggagaa
atgggagttatgggaactccaggactgccagggactcctggaccagttggagatcgaggg
ttgcctggtgaaaaaggtagcccagggttcaaaggggtagttggaccacagggtgatcca
ggtgtcaaaggggataaaggtgaagctggtctcccaggagtacctggaagcatggatacc
atggacatggttagtctcaaaggccaaaagggagatccaggagaaaaaggggaccatgga
ccaacaggagaaaaggggttacgtggggagtatggagaaccaggaattccaggaaaggat
ggtgaacctggtactccaggacatccaggaccaaaaggtgatcagggccccccagggttc
ccaggagaaccaggaattccaggacaaaaaggatcagttggtgaaatgggtttgccagga
acacctggagaaaagggtctgcctggagtaccaggttcaccaggcacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcagcaggttttcctggaattggctttcca
gggtctcctggtgagaagggagaacctggaagaacgggtagtccaggtttatctggagac
aaaggtgaaaagggaaatataggaattccaggaataccaggtgccccaggtcccaaagga
tctcctggcatggcaggatttccagggagccctggccgccatggagaaaagggtgaaaaa
ggacttcctggcttaagtggcatcccaggtttaaaaggagaaccaggtgaacctggtgtt
ccgggtcctgctggttccattggtcagaaaggtgaaccaggttatgatgggattccgggt
gctgctggcgcaaagggtgaacaaggttttccaggtagaggatttccaggatctccaggt
gcaaagggagacaaaggtgcgaaaggcgatgtgggtttcccaggatccccaggaagtccg
gggataccaggtctaaaaggagaaccaggatatgctggtccaccaggccctaaaggcaac
caaggtcttcctggactaccaggaattgcaatggagggccctaaaggagacagaggaccc
caaggccaacctggccttccaggtttaccaggtccaatggggccaccagggccaccaggt
ctgaaaggggccaaaggagagcaggggagcgaaggctggcctgggactcctggaggtcca
ggagtcaaaggtgatccaggtttccagggtctgccaggtagtccaggtttaccaggagat
atcggtcaaaagggtgatctagggcctccaggagttccaggagttccaggtccaaaagga
tctccaggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggcccaccgggcccaccaggtccttttcagcttatcaaaggagagcctggt
ttacctggccctgtaggaccagttggtctcaaagggttcccaggacttccaggtcccaaa
ggacagcaagggatgacaggaccttcaggtgtacctggaccgcccggtagtccagggttt
gatggcaaacctgggcaaaaaggagaagttggtccttatggtcccccagggcccagagga
ttccctggtccacctggtcctgaaggtttgcctggggctatgggcccaccaggtgcagca
tctgttgctcatggcttccttgttaccagacatagtcaaaccattgaagaaccattatgt
ccttcgggaacaaggctcatttatcatggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctgggcacggcaggaagctgtcttcgtaaatttagtactatg
cctttcttattctgcaatatcaacaatgtatgtaactttgcatcaaggaatgactattcc
tactggttgtccacgcctgaacccatgccaatgagtatggctcctatcactggggaaaat
atcaggccattcatcagcagatgcgctgtgtgtgaagcccctgctatggtaatagctgtt
cacagtcaaacaattcaaataccaccatgtcctgaaggctggagttcactttggattggt
tactcctttgtcatgcacaccagtgctggtgctgagggctctggccaggccctggcatct
cctggttcctgcctagaggagttccgtagcgctcccttcattgaatgccatggccggggc
acctgcaattattatgcaaatgcttacagcttctggcttgccactatagagaggaatgag
atgttcaagaaaccgactccgtcaactttgaaagcaggggatctgcgctcaaacgttagc
cgttgtcaagtctgtatgagaaaaacataa
DBGET
integrated database retrieval system
