Aythya fuligula (tufted duck): 116492311
Help
Entry
116492311 CDS
T07966
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116492311 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aful04131
]
116492311 (VPS8)
Membrane trafficking [BR:
aful04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116492311 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
TPR_Vps41
WD40_CDC20-Fz
Clathrin
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR5
Beta-prop_HPS5
WDR55
ANAPC4_WD40
Beta-prop_WDR3_1st
Motif
Other DBs
NCBI-GeneID:
116492311
NCBI-ProteinID:
XP_032048771
UniProt:
A0A6J3DBF3
LinkDB
All DBs
Position
9:10195767..10270824
Genome browser
AA seq
1402 aa
AA seq
DB search
MDAAQEPGSCPPGAEAEPGGLPGPGPPAPRLSVAELDRELDSRSELIDDKEFDIPQVDTP
PTLESILNETDDEEESFILEDPFLLNIDNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDS
LSLHGSVIRLSLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFGKDQNQA
LRLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGT
AILHIKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKV
ELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSV
NPMLAFCRGDVVHFLLVKRDDTGAIHVTKQKQLHLHYDLINFTWINSRTAVLLDSVEKLH
VIDRQTQEELETIEIPEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQIF
YLGTKSVHVMTLRSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLSGDTSKRKAVI
ADRMVEILLHYADRTLKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRTDLLFNQIYDKM
SENSVAKGIFLECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENMEACIVHMDITSLD
IQQVVLLCWENRLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKL
LVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEGSVDEEVYPHIRTLLHFDT
REFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKP
NNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEF
YQICEFMYERELRYDKIIGCYLRDPVRKEEVFNYIHNILSMPGYSTEEKQSVWDKALEHI
KELLQLSPCKAADLVAIHFSEQIESIITNLQDQFLLFQFLRSLLDPREGINQDLIHLPPS
ITEQFIELLCQYSPDEVLETLKVVECCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFL
VMLERLQSKLLMLTQDDESSEQLPLLENIEDTLMKTIALCQRNSHNLNQQQQEALWFPLL
EAMMSPQKLSGSSQYRYAESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQ
GLVLGMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRR
QETADEIIVFSCGHLYHSLCLLSKECGVVTKGLMRWMCYKCNSSNKGGKLSENFSELKKG
SATSLAQTGSESVLDPQQIQAFDQLCRLNRGTSRLALLTELSRTHGEKHGLLSVAHGDPA
TSSVFQNETFQLHLAPPPLVEE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggctcaggagccgggatcctgccccccgggagccgaggccgagccgggcggg
ctgccgggcccggggcctcccgctccgcggctgagcgtggcggagctcgaccgcgagctg
gactcccgcagcgagctgatcgatgacaaagaattcgacattcctcaagttgacacccct
ccgacgctggaaagcatcttaaacgagactgatgatgaagaagagtctttcattctggag
gatccctttctcttgaacattgataacacggatacacattcctatgacacatcttctgta
gcaagttctgacagtggggaccggacacacctgaaaaggaagaaaaaactcccagattct
ctttctctccatggatcagttatacgactctcgcttctgaaaggaatttctgcccagatt
gtatctgcagcagacaaagtggatgctggcttgcccactgctatagcagcatcaaacctg
atagcagtggggacttctcatgggttagctctgatttttggaaaagaccaaaaccaggcc
cttcgactgtgtctgggcagcactgctgtgggggcccagtatggggctatctcggctctc
agcatcaacaatgactgttcgaggctcctgtgtggctttgcgaaaggacagatcacaatg
tgggatctggccagcgggaagctgctacgatcaataacagatgcgcaccccccaggaaca
gctattttgcacattaagtttacagatgatccaacacttgcaatttgcaatgatagcgga
ggctccgtatttgaactgtcatttaagagggttatgggagtgagaacgtgtgaatctcga
tgtctcttcagtggctcaaagggggaggtttgctgtattgaaccactacacgcaaaagtt
gagctgagagaccatcctatcacccagtactcgctattggccatggcctccctaacaaag
atactagttattggcctgaagccatctctgaaagtgtggatgacttttccctatggtcgt
atggacccttctagtgtccctcttctggcgtggcattttgtggctgtacagaactctgtg
aaccccatgcttgcattttgtcgaggcgatgttgttcattttcttttggtaaagagagat
gatactggtgcaatacatgtcactaagcagaagcagctccatctacactatgacctcatc
aacttcacttggataaactcacggacagcagtgcttctggacagtgtggagaagctgcat
gttatagatcgtcagacacaagaggaactggagaccatagagattccagaagttcagctg
gtctacaacagcagccacttcaaatcgctggctacaggaggcaatgtcagcgaagcactg
gcgttggttggagagaaagcttgctatcagtccatcagcagctgtggtggtcagatcttt
tacctgggaactaagtctgttcatgtcatgacactgaggagctggagagagagagttgac
caccttctgaaacaagagcgtctcactgatgccctggctcttgcttggtccttttatgaa
ggcaaagcaaaggctgtagtaggcttgtctggggacacgagcaagcggaaagcagtcatt
gcagacaggatggttgaaatccttctccattatgctgatcggactttgaagaaatgtcct
gaccaaggaaaaatccaggttatggagcaacattttcaggacatggtgcctgtcatagtt
gattactgcctcttactccagcgcacggatctattatttaatcagatatatgataagatg
agtgagaattctgtagctaaaggcatctttctggagtgcttggagccatatatcttgagt
gataagctgatgggaatcacagctcaagtgatgaaagacttgctgcttcacttccaagac
aagaacaggctggaaaatatggaagcttgcattgtgcatatggatatcaccagcttagac
atacagcaggttgtacttctgtgctgggaaaaccgtctctacgatgccatgatttacgtc
tacaacagtgggatgaatgacttcattagccccatggagaaactgttcaaagtcattgct
cctccgctgaatgctgggaagtctctcacagatgaacaggtggtaatgggcaacaagctg
cttgtatatataagttgctgcttggcaggccgtgcgtatccactgggtgatattcctgaa
gatctggtacctctggttaaaaaccaggtctttgaatttctcatccggctacattcaact
gagggatctgtggatgaagaggtctaccctcacattcgtaccttgctgcacttcgacact
cgggaattccttaatgttcttgctctgacttttgaagactttaagaatgacaagcaagct
gtggaatatcaacagcgaattgtggacatacttctgaaagtgatggtagagaattctgac
ttcaccccatcacaggttggctgtctctttactttccttgcccgtcagcttgccaaaccc
aacaacacattgtttgtgaacaggacgctttttgaccaggtccttgaatttctgtgtagt
ccagatgatgactcccgccattcagagaggcaacaggtccttttagaattgcttcaggca
ggagggatagtacagtttgaagagagccgtcttatccaaatggcagaaaaagctgaattt
tatcagatttgtgagtttatgtatgaacgagagcttcgctatgacaaaatcattggctgt
tacctgcgtgatccagtgagaaaggaagaagttttcaactatattcacaacatcctgtcc
atgcctggctacagtactgaagaaaagcagtcagtatgggacaaagctttggaacacata
aaggaattgctgcaacttagcccatgtaaagcagctgacttggtagccatccacttcagt
gagcagattgagagcatcattacaaaccttcaggaccagttcttactcttccagtttcta
aggagtctgcttgatccgagagaaggcatcaaccaagacttgattcatttaccacccagc
atcacagagcagttcattgagctgctgtgtcagtacagcccagatgaggttttggagacg
cttaaagttgtggaatgctgcaggctggaagaaaccatccagataacccagaaacatcag
cttcatgaagcttcctcatatttactggagaagaagggagatatccatggtgcctttctg
gttatgcttgagcgattacagagcaagttgctgatgcttacacaagatgatgaaagttca
gaacaactccccttgctagaaaacattgaagataccttaatgaaaaccattgctctttgc
cagaggaattcacacaacttaaaccaacaacagcaagaggcactctggtttcccctgctg
gaggctatgatgtccccacagaaactgtccggttcttcacagtatcgctatgctgaatca
ttgaagagtttgacgatgcaagtgctgaacaacatggctgcatttatcgctcttccctca
atcctacagagaattctacaggatccagtttatggaaaagggaaacttggagaaattcaa
ggacttgtcctgggaatgctggacacttttaactatgaacaaacccttctagagacaact
acgaatcttttaaaccatgatctccactggtcgctgtgtaacctaagagcttctgtcact
agagggcttaccccaaagcaggattactgctgcatttgtctacagcagtacaaaagaagg
caagaaactgctgatgaaatcattgttttcagctgcggccacttgtaccattctctgtgt
ctgctgagtaaagagtgtggggtagtaaccaaaggcctgatgcggtggatgtgctataaa
tgcaactcaagcaacaagggaggaaaactgagtgagaacttttcagagctgaaaaaagga
agtgcgacatccttggcgcagacaggttcagagtctgtgttagatcctcagcaaatccaa
gctttcgaccaactctgccgactcaaccgaggaacctccagactcgctctcctgacagaa
ctgtcccgcacccatggtgaaaagcacgggctgctcagcgtggcgcacggggaccccgcc
accagcagcgtcttccagaacgagaccttccagctgcacctggcgccgcccccgctggtg
gaagagtag
DBGET
integrated database retrieval system
