KEGG   Aythya fuligula (tufted duck): 116492765
Entry
116492765         CDS       T07966                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
aful  Aythya fuligula (tufted duck)
Pathway
aful03030  DNA replication
aful03410  Base excision repair
aful03420  Nucleotide excision repair
aful03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aful00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116492765 (RFC4)
   03410 Base excision repair
    116492765 (RFC4)
   03420 Nucleotide excision repair
    116492765 (RFC4)
   03430 Mismatch repair
    116492765 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aful03032]
    116492765 (RFC4)
   03036 Chromosome and associated proteins [BR:aful03036]
    116492765 (RFC4)
   03400 DNA repair and recombination proteins [BR:aful03400]
    116492765 (RFC4)
DNA replication proteins [BR:aful03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    116492765 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    116492765 (RFC4)
Chromosome and associated proteins [BR:aful03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    116492765 (RFC4)
DNA repair and recombination proteins [BR:aful03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     116492765 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    116492765 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_assoc_2 AAA_lid_RFC1 Rad17 AAA_16 AAA_30 AAA_22 AAA_11 DUF815 SLFN-g3_helicase Mg_chelatase AAA_28 AAA_14 AAA_24 RuvB_N TIP49_C AAA_19 AAA_5 DNA_pol3_gamma3 DNAX_ATPase_lid AAA_7 ResIII Nsp2_AV
Other DBs
NCBI-GeneID: 116492765
NCBI-ProteinID: XP_032049628
UniProt: A0A6J3DJV5
LinkDB
Position
9:complement(17656467..17667622)
AA seq 362 aa
MQAFLKGPSAISTKPPAARDRGAAGSSGEGKKPRPVPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKACPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKISSEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITENIVTEIAGIIPKETMDGLLSACQSGSFERLETVAKNLINEGYA
VGQLVNQLHDIVVESDDFSDKQKSIIVEKLAEVDKCLADGADEYLQLMSLCALVMQQLTQ
NT
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctgaagggcccctccgccatcagcaccaagcccccggccgccagggac
aggggcgcggcggggagcagcggcgagggcaaaaaaccccggcccgtgccctgggtggag
aaatatcgccccaagaacgtggatgaagtcgccttccaggatgaagtggtcgctgtgctg
aaaaagtccttggaaggcgccgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgccagagaactctatggtcctgaattattccga
caaagagtccttgagttaaatgcctccgatgagcgtggaatacaagtgatccgggaaaaa
gtgaaggcttttgctcagctaacagcatctggaagtcgttcagatggcaaggcttgtcct
ccttttaagattgtaatcctggatgaagcagactctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttctgccttatttgtaactac
atcagcagaataattgaacctttaacgtctcgatgctccaaattccgcttcaaacctttg
tcagacaaaatccagcagcagaggctattggacgtttctgagaaggaaaatgtgaaaatc
agtagtgaggcagtctcttaccttgttaaagtgtcagaaggggacttgagaaaagccatt
acttttcttcaaagtgctactcgcttaatgggagggaaggagatcacagagaacatagtc
actgaaattgctgggatcatccctaaagaaacaatggatggactgctgtctgcctgccag
agcggttcattcgagagactggaaacagtggcaaagaacctcataaatgaagggtatgct
gtcggtcagcttgtaaaccagcttcatgatattgttgtggagagcgacgatttcagtgac
aagcagaaatctatcatagttgagaagcttgcagaagtggacaaatgcctggcagacggt
gctgatgaatacttgcagttgatgagtctctgtgccctcgtgatgcagcagctgacacag
aacacctaa

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