Aythya fuligula (tufted duck): 116493829
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Entry
116493829 CDS
T07966
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116493829 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aful03019
]
116493829 (CNOT1)
Messenger RNA biogenesis [BR:
aful03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116493829 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116493829 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
116493829
NCBI-ProteinID:
XP_032051266
UniProt:
A0A6J3DIH4
LinkDB
All DBs
Position
12:9106198..9164227
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYACHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSSVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPIAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTACTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaacaggcacggt
cccgaggcagacaggcatttactacgctgcctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacgaaaccaaactttatctcgacgctgtcctacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatattcggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagttcatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcgtttggggtgggacag
gaacaaattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgtcct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaacaatgatggagagttctctggcagacttcatgcaa
gaagttggctatggcttttgtacaagtgttgaagaatgtcgcaacataatcatgcagttt
ggtgtccgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcagggttgacagatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatgggaaggataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaagagttgaatcctagcctggacttcaaagtagtaacctatgaa
ttggaccacccaggatttcagattcgtgacagcaagggcctgcatattgtggtgtttggc
atccagagaggcttgggcatggaggtttttccagttaatgccatatacagaccttggaaa
catgcagagggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
tttgctgactacgcttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgatcgaatctctgttgcgattg
gcagaagtgggacagtacgagcaggttaagcagctcttcagttttcctatcaagcattgc
ccggatatgttggtattggccttattgcagatcaacacttcctggcataccttgcgccat
gaactcatctccacgctcatgccgattttccttggcaaccatcccaactcggccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcgattcgtcagcttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggaacatggggagcccttcatccaggcctgcatgactttctta
aagagaagatgtccgtctatcttgggtggccttgctccggaaaaagatcaacccaaaagt
gctcagcttcctccagagaccttggcgactatgttggcgtgtctgcaagcttgtgctggg
agcgtttctcaggagctgtcagagacgatactcaccatggtggccaactgcagcagcgtc
atgaacaaggctaggcagccgccacccggagtcatgccaaagggacgcccacccagtgcg
agcagcttggatgccatctctcctgtacagatcgactcgcttgcgggcatggcatctctt
agtttaggtggctcagctgctcctcatacccagagcatgcaaggcttccctccaaacttg
ggctctgcgttcagtactcctcagtcaccagcaaaagcgtttccccctctttccacccaa
aaccagacaacaggtttcagtggcattggaggactctcttcacaacttccagtaggtggt
cttactacgggtagcctgactggtataggaactggagccctgggcctccctgcagtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaaccagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttataaccatccacca
catccgaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgcatgctgaggaatttgtttgaggaataccgt
ttctttccccagtacccagataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacttacaggagtacatagaatatggacagcagtctagagat
cctcctgtgaagatgcagggatcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctattgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccatcacaatcactcgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaataccaccaatattgatacgctgttagta
gcaacagatcaaactgagagaattgtggaacctccagaaaatgtccaggaaaaaatcgct
ttcatctttaataatctgtctcagtcaaacatgactcagaaggttgaagaactgaaggag
acagtgaaagaagagttcatgccttgggtatcgcagtatctcgtgatgaaaagagtcagt
attgagccaaattttcacagcttatattcaaacttccttgacactcttaagaatccagag
tttaataaaatggttctgaatgaaacttacagaaacatcaaggtgctactgacatcagat
aaagctgcagccaacttctcggaccgttccttgttaaagaaccttggtcactggctggga
atgattacactggctaaaaataagcccatcttgcacacggatttggatgtgaaatcgctg
ctactggaagcatatgttaagggacagcaggaattgctttatgtagtaccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccgtggacgatg
gccattatgaatgttttagctgagctacatcaagaacatgacctaaaattgaatctgaag
tttgagattgaagtgctctgcaagaatcttgcgttagacatcaatgagttgaaacctgga
agtctcctgaaagacaaggatcgcctgaaaaatctggatgagcagctctctgctccaaag
aaagatgtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccgcttgtacagccacagttcctccacagccccagtacagttaccac
gacatcaacgtctattccttaggagggttggctccacacattactttaaaccctacgatc
ccgctgttccaggcccacccccagctgaagcagtgcgtgcggcaggcgattgagcgagca
gtgcaagagctcgtccatcccgtggtcgatcggtccatcaagattgccatgacgacgtgc
gaacagatagtcaggaaggacttcgcgctggattcggaggagtcgcggatgcgtgtggcc
gcacaccatatgatgcggaacctgactgccgggatggccatgattacctgcagggaacct
ttgctcatgagcatagctaccaacctgaagaacagctttgctactgcgctgagggcagcc
tccccacaacagagggacatgatggagcaagcagctgcccagctagcacaggataactgc
gagctagcgtgctgctttatccagaagacagctgtggaaaaggcaggccctgaaatggac
aagaggctagcaactgaatttgagctcagaaaacatgctagacaagagggtcgtcggtac
tgtgatcctgttgtgttaacttaccaagctgaacggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttacgaagagtttgcacgcaatgtccct
ggcttcttgcctaccaatgacttaactcagcctacgggattcttggctcagcctatgaag
caagcttgggctacagacgatgtggcacaaatctatgacaagtgtatgacagaactggag
caacacctgcagtccattccacataccctggccatgaatcctcaagctcaagcactgcgc
agcctcttggaggccgtagtagtggctcgtaactcccgtgatgctatcgctgcgcttggg
ctgctgcagaaggctgtagagggcttactggatgccaccagtggggcagatgctgacctc
ctgctgcgctaccgtgagtgtcatctgcttgtgctgaaggctctgcaggacggtcgtgca
tatggatctccgtggtgtaataaacagattactaggtgcctgattgaatgcagggatgag
tacaagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatgcag
cagtacgatcttcacttggctcagtcaatggagaacggcttgaactacatggctgtggcg
ttcgccatgcagttggtaaagatcctgttggtggatgagagaagtgtcgcgcatgttacg
gaggcagacctgttccacacgatcgagacacttatgaggattaatgctcattccagagga
aacgccccagaaggattaccccagctgatggaagtggtccgatcaaactatgaagccatg
attgaccgtgctcacggaggtcccaatttcatgatgcattctggaatttcccaagcctct
gagtatgatgatccgccaggtctgagggagaaggcagaatacctgctgagggagtgggtg
aacctctaccattcggctgcagcgggccgcgacagtaccaaagcgttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaaaacggatgac
ctgatcacccgctttttccgtctttgcaccgaaatgtgtgttgaaatcagctatcgtgct
caggctgagcaacagcacaaccctgctgccaaccccactatgattcgagccaagtgctac
cacaatctggatgcctttgtgcgacttattgcactgctggtgaagcactctggagaggca
accaacaccgttacaaagatcaacctcctgaacaaggtccttggtattgtggtgggagtt
cttctgcaagaccacgatgttcggcagagtgagtttcagcagcttccttaccatcgcatc
ttcatcatgttgctgttggaattaaatgctcctgagcatgtgctggaaaccatcaacttc
cagacactcacagctttctgtaacacatttcacatcctgaggcctacaaaagctccaggt
tttgtttatgcctggctggaactgatctcccaccggatatttattgcaagaatgctggca
catacaccacagcagaagggttggcctatgtatgcccagttactgatcgatcttttcaag
tacttggctcctttcctcagaaacgtggaactcaccaaacctatgcaaattctttacaag
ggcactctgcgtgtgttgctggtcttgttgcatgatttcccagaatttctttgtgactac
cactatgggttctgtgatgtgatcccacccaactgtattcagctaaggaatctgatcctg
agtgccttcccacggaacatgaggcttccagaccctttcacccccaatttaaaggtggac
atgttaagtgaaattaatattgctccacgaatactcaccaatttcactggagtgatgccg
ccacagttcaagaaagacttggattcctatctcaaaacccgttctccagttacttttctg
tctgacttgcgcagcaacttacaagtatcaaatgaacctggcaaccgctacaacatccag
ctgattaatgcactggtgctctacgtaggtactcaagctattgcgcacatccacaacaaa
ggcagcacaccgtccatgagcaccattacccactcagcgcacatggacatcttccagaat
ttggctgtagacctggacactgaaggtcggtacctcttcttgaacgcaatcgccaaccag
ctgcgatatcccaacagtcacacccactacttcagttgcaccatgctttacctgtttgca
gaggccaacactgaggctatccaggagcagatcactagggttctcttggaacgactgatt
gtaaataggcctcatccctggggtctccttattactttcattgagctgataaaaaatcca
gcgtttaaattctggaaccatgaatttgttcactgtgctccagaaattgagaagttgttc
cagtcggttgcacagtgctgcatggggcagaagcaggcccagcaagtgatggaagggacg
ggtgccagttag
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integrated database retrieval system
