Aythya fuligula (tufted duck): 116493991
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Entry
116493991 CDS
T07966
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03018
RNA degradation
aful03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116493991 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
116493991 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aful03019
]
116493991 (LSM8)
03041 Spliceosome [BR:
aful03041
]
116493991 (LSM8)
Messenger RNA biogenesis [BR:
aful03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116493991 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
116493991 (LSM8)
Spliceosome [BR:
aful03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
116493991 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
116493991
NCBI-ProteinID:
XP_032051580
UniProt:
A0A6J3DNL0
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Position
1:25847326..25852099
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AA seq
96 aa
AA seq
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MTSALEGYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgcgctggagggctacatcaaccgtactgtcgcagtgataacttctgatgga
agaatgattgtgggaaccctcaaaggttttgatcagaccattaacttgattttggatgag
agccatgaacgagtgttcagttcttcacaaggagttgagcaagtagtgctgggattatac
attgtacgaggtgataatgttgctgtcattggtgagattgacgaagagacagattcagct
cttgatttggggaacattcgagcagaacctttaaattcagttgtgcattga
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