Aythya fuligula (tufted duck): 116494189
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Entry
116494189 CDS
T07966
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
aful
Aythya fuligula (tufted duck)
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aful03036
]
116494189 (CHD9)
Chromosome and associated proteins [BR:
aful03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
116494189 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Motif
Other DBs
NCBI-GeneID:
116494189
NCBI-ProteinID:
XP_032051817
UniProt:
A0A6J3DQJ1
LinkDB
All DBs
Position
12:5475566..5561223
Genome browser
AA seq
2892 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NQQKISEFEPLNQFDSLKLHQVSTSFNSSADNVLSPHSQFNCSPIHPQTQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRSQQ
SRNNTGQDALSQPKDFLEVNVSTSHRVNVNHPPPVSNPSTSQQPLSVQQFSQTASASIHF
CGNQEGTFDGQSPTITPCSVNNSQQFSSPYSYSNNHISPTSLLQSTTALSSSQQTHPISD
FTGSDAFTSQTGTKQETTEHMLNPNTPLNSSSFQMLHSAHPQGNFSSSKLSPVNINFPAS
AGSASQISHFTDPIESNGFTSLDENLLHQVDAPNEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEHHISPHQVTQASDIGRAQSQSQIHPWHSAVSSQHLQERSRITLQGQP
PSSKKTDGSGSYTKLQNTQVRAMSEKKQKKKADSESKQEKANRIISEAIAKAKERGERNI
PRVMSPENFPSVSAEGKEEKKGRKVKTKPKDKETKKPKTGSSTKIKEKTKIGKLIITLGK
KQKRKNESSDELSDAKQTPQRPVKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAKVSVK
MKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRIIKKEISAGMTVETEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSL
CEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
SWKKIEHSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LSGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKC
CNHPYLIKGAEEKILGEFKETYSPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLK
LGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSL
VIDTPRIRKQTRPFSATKDELAELSEVESEGEDKPKLRRPCDRSNGYGRTECFRVEKNLL
VYGWGRWREILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDG
QTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGNEFQKVFEGIDASEIDVWVPEPDHSEVPAEWWDADADKSL
LIGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQRANDYIDGDVEDPEYKPAPAL
FKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQQ
IQPAFPIQTSMMQPPYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERGR
FDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEERASR
TLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTD
YHILRDPELSFMSAQRNYSQNKVALSRTSTPLLHQYQMALAASPLTPQSRLPDAKVNALE
DAKVKNENLKEDAQSSGEESMSTEETQTMMKSEPLSPKNGTPVQNTDHRPSVKTETDRRM
VAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSG
SSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGTAHIKAYDEESVA
SLSTTQDETQDSFQLNNGTPNSSYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWP
SARRNYDSNTVASFYTTKLLDSPGAAADYSEPSAPTPPLAGVKEEYDQSPQMSKVKKHVR
EKEFTVKINDEGGLKLTFQKQGLSQKRPFESEEGALGQQQYLARLRELQNASETSLVNFP
KSLPESGTSSHITASANGVIVDSQPAVKKRRGRRKNVEGVDVLFINRNKQPNHVNPGINS
CQVAAGINPALTYTQSQGMLDAESPVPVINLKDGTRLAGDDAPKRKDLERWLKEHPGYVE
DLGACIPRTQLHDGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLK
DLCRFLKENPEYGVAPEWGDVVKQSGFLPEVMFDRILTGPVVREEVSRRGRRPKSEIAKA
TAAAAAATAASVSVNPLLANGLLPGVDLPSLQALQQNLQNLQSLQVTAGLMGMPAGLTAG
GDAKNMAAMFPMLLSGMAGLPNLLGMRGLLTKSTESISEDKKGNDSKEADIKKERTEDQN
TDTGGENSVLSSPSTSSAAAAANPLSLNPLLLSNIFYPGMLLTPGLNLHNPALSQSNIFD
VQDSESNDTGSAKPTEEKEENSRVRDQEDKGGTEPSSHNENSTDEGSEKADASSGSDSTS
SSSEDSDSSDED
NT seq
8679 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagcgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattgaat
ttaggtgcagaatttgaacctttgcacatagactccttgaaccatgtgcaagatgctcag
aatcaacaaaagataagtgagtttgagccgctgaatcagtttgattctttgaaacttcac
caagtaagtacgtctttcaatagctcagcagacaacgtcttatcgccacactctcaattc
aactgttcaccaattcatccacaaacccagtctaatgggatgtttccagatgtggctgat
ggtagtcctatgtggggtcaccaaactgccacgactgtttcgaatcaaaatgggtccccc
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccgcagcatcagtgtgcctcactacgatctcaacaa
agcaggaacaacacggggcaagatgctctgagtcagccaaaagacttcctggaagttaat
gtatctacttctcacagagtcaatgttaaccacccacctccagtttctaatccttcaact
tcacagcagcctctgtctgttcaacagttttctcagactgcaagtgcttcaatacatttt
tgtgggaatcaagaaggaacttttgatggacagtccccaactattactccgtgttctgtc
aataatagccaacaattttcatctccttattcgtactctaataaccacatttctcctacc
agccttcttcagtctacaacagctctttctagtagccagcagacacaccccatctctgac
ttcactggaagcgatgcctttacatctcaaacagggaccaagcaagaaacaacggagcac
atgttgaatcctaatacacctttgaattcaagtagttttcaaatgttgcattctgcgcat
cctcagggcaactttagtagttcaaaactttctcctgtgaatattaattttccagcttct
gctggttctgcttctcagataagccatttcacagaccctattgagagcaatggttttacg
tctctggatgagaacttacttcatcaagttgatgctccaaacgaaccgtttacaggactt
gacccagatgacctccttcaggaagaccttctgccacagtttgatgactctgcgtttgtt
caggatagcacaagccatgttttagagcatgacctagaacaccatataagcccccatcaa
gtaacacaggcgtctgatattggtcgggcacagtcgcaaagtcagattcatccctggcat
tctgcagtttccagtcagcatctgcaagagagaagtcgtataaccttacaaggacagcct
ccttcctccaagaagactgatggttcaggatcatatactaagttgcagaatacccaggtg
agggcaatgtctgaaaagaagcagaagaaaaaagcagactctgaaagtaaacaagagaag
gcaaatcgcataatatctgaagcaattgcaaaagcaaaagagagaggagagagaaacatt
ccacgagtaatgagtcctgaaaacttccccagtgtttcagctgaaggaaaagaggaaaag
aaaggcagaaaagttaaaaccaaacccaaggacaaggagaccaaaaaaccaaaaactggt
tcctcaaccaaaattaaagagaaaacaaaaattggaaagctaatcatcacactgggtaag
aagcagaaaagaaaaaatgaatcttcagatgagttgtctgatgctaagcagactccgcag
cggccagtgaaagatgaagactcacagaagagaagatcaaatcgtcaagttaaacggaaa
aagtatgctgaagaaggagaaggaaagcagtcagaagaagaagctaaagtttctgtgaaa
atgaaaaagaattcagctcctttacctgctgaacagcctttacagttatttgtggagaat
ccaagtgaagaagatgcagcaattgtagacaaaatcttatcctctaggataataaagaaa
gaaatatctgctgggatgactgtagaaacagaagagttttttgtaaaatataagaactac
tcttatctccactgtgagtgggccacagaacagcagcttttaaaggataagagaatccag
cagaaaataaaacggttcaaactaaggcaagcacaaagagctcacttttttgcagatatg
gaagaagaaccttttaatcctgactatgttgaagtagaccgggtattagaagtctctctt
tgtgaagataaggacactggtgagcctgttatttactatttagtaaaatggtgttcgttg
ccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaagaa
tttgaacaattgcaagcttccaggcctgattcaaggagattggaccgaccgcctccaaac
tcctggaagaagatagaacactccagggaatataaaaatggcaatcagctcagggaatat
caactggaaggacttaactggctcctattcaactggtacaacaggcgaaattgcatttta
gcggatgaaatgggtcttggcaaaaccattcagtcaattacattcctctatgaaatcctc
ctgtctggtataagagggccttttctgatcatagctccgctttccactataacaaattgg
gaaagagaattccgcacgtggactgaccttaatgttgtagtgtatcatggaagtatgatc
agcaggcagatgattcagcagtacgaaatgtacttcagggactcccagggacgtattgtt
cgaggtacctaccgattccaagccattatcacaaccttcgaaatgattcttggtggctgt
ccagagctaaatgcaattgaatggcgatgcgttataattgatgaagcacacaggctgaag
aataaaaattgcaaactcttggaaggactaaaattaatgaaccttgagcataaagtgctg
ctaactggcacaccactgcagaacacagtagaagaattatttagtctccttcattttctt
gaaccattgcgtttccctgctgaatctaccttcatgcaagaatttggagaccttaaaaca
gaggaacaggttcagaaactacaagctatcctgaaacccatgatgctcagacggttaaaa
gaagatgtagaaaaaaagctggctcctaaggaggaaactataattgaagtagaactaact
aatattcagaagaaatattatcgagcaattctagagaaaaatttcgctttcttatccaaa
ggagcagggcaagcaaatgtaccaaatctggttaacactatgatggaactcagaaaatgt
tgtaatcatccttatctcatcaaaggtgctgaagagaaaatccttggagagtttaaagaa
acttacagcccaagtgcccctgacttccatctacaagcaatgatccagtctgctgggaaa
ttagttcttattgataaacttcttccaaaaatgaaagccggaggccacaaggtccttatc
ttctctcaaatggtgcgatgccttgatattttggaggattaccttatacataaaagatat
ttatatgaacgaattgatggacgagtacgaggtaacctcaggcaagctgcaattgaccgg
ttcagcaaaccagattccgatcgctttgtgttccttctgtgcaccagagctggtggtttg
ggcatcaatttgactgcagcagatacgtgtataatttttgattctgactggaatcctcaa
aatgatctgcaggctcaagcccgttgtcacaggattggtcagaacaaagcagtgaaggtc
tacagactgataactcgtaactcatacgaaagagagatgtttgaccgagcaagcctgaaa
ctgggactcgataaggctgtcttacagagtatgagcggaagagaaaacagtgttggtggt
atccaacaactctcgaaaaaagaaattgaagacttgctccgaagaggtgcatatggtgcc
ataatggatgaagaagatgaaggctctaaattctgtgaggaagacatcgatcaaattttg
cagcgccgtactaaaactatcacaattgaatcagaaggaaggggctccacatttgccaag
gctagctttgttgcatctggaaacaggactgatatttcactagatgatcccaacttttgg
cagaaatgggccaaaaaagcagaaatagatatagatgccatcagtggccgaaacagcctg
gttattgataccccaagaattagaaaacaaacaaggcccttcagtgctacaaaagatgag
ctggctgaattgtctgaagtggaaagcgagggtgaggataaaccgaaactccgcaggccg
tgtgaccgttccaatggatatggaagaacagagtgctttcgggtggaaaaaaacctactg
gtctatgggtggggtcgctggagagagattttgtcacacggtcgcttcaagagacagcta
aatgagcaggatgtggagataatttgccgagctctcttagcctactgtcttgttcactac
agaggggatgagaaaataaaaagttttatatgggatctcattaccccaacagaagatggg
caaacacgagagctgcagaatcaccttggcctatcagcccctgtgcctagaggaagaaaa
ggaaaaaaggtgaagacccaggctagcacttttgacatacacaaagcagaatggcttcga
aaatacaatccagaacatctgttgcaagatgaaggatacaaaaagcacataaaacaccac
tgcaacaaggtcttgcttcgagtaagaatgctgtattacctaaaacaagaagtcattggt
aatgaattccaaaaggtgttcgaaggaattgatgccagtgaaattgatgtttgggtccct
gagccagatcactcagaagttcctgctgagtggtgggatgcagatgcagataaatccctt
ctaattggagtttttaaacatggttatgaaaaatacaacactatcagagcagacccagca
ctgtgcttcttggaaagggttggcaagccagatgataaagcggttgctgctgagcagaga
gcaaatgattatattgatggggacgtagaagatccggaatataaaccagcaccagcattg
tttaaagatgacatagaggacgatgtttcatctccgggtgatttggtaatagcagatgga
gatggacaaatgatggaaggagacaaaatctattggcccacccagtctgccttaacaaca
cgtcttcgacgcctaataacagcttatcaacgaaccagtaaaaataggcaggcccagcag
atccagccagcattcccaatacaaactagtatgatgcagcctccatacgaagaagctgct
ctaaacccaaagatggctgctaagatagaaagacagcaaaggtggacaagaagagaagaa
gctgatttctacagagttgtgtccacatttggagtggtatttgatccggaacggggacga
tttgattggaccaaatttagagcaatggctaggctacataagaaaactgatgagagctta
gaaaagtacctgtatgcttttatgtcaatgtgcaggagggtctgtcgtctcccctcaaaa
gaagaactcgtagacccgaacatttttatccaaccgattacagaggagcgtgcttcccgg
actttgtatcgcatcgagctcctaaggaaggtgcgagaacaggcccttagacacccccag
ctgtttgagcgactaaagctatgtcagccaaacccagacttacctgtctggtgggagtgt
gggactcacgacagggatttgcttattggagctgctaaacatggagttagcaggacagat
tatcatatccttcgtgatcctgaactgtcatttatgtctgcccagaggaactatagtcag
aacaaagtggcgctctcaaggacttctactccgctcttgcatcagtaccagatggcatta
gctgcttctcctcttacaccgcagtcaagattgccagatgctaaagtgaatgctctcgag
gatgcaaaagtgaaaaatgaaaatctgaaagaggatgctcagtcttctggagaggaatct
atgtctacagaggagacacagacgatgatgaaatctgaacctctgagtccaaaaaacggc
acaccagtacaaaatacagaccacagacctagtgtgaagactgaaacagacaggcgcatg
gtggcagcaaggacagagcctctaactccaaacccagcttccaaaaaacagagagtcagc
aaaagaggatctgactctagctctgactcagactctgactcagatagatcatcctgttct
tccaggtcatcttcgtcatcctcttcgtcttcctcatcttgttcacactctcgatcaggc
tctagttcttcttcatcttcatcttgttcttcagcatcttcatcctcatcatcttcatca
tcctcctcatcgtcctcatcatcatcatcgtctgaagagagtgatagtgatgaagaggag
gcacaaaaacgtgcagaaggaaccgctcatataaaagcatatgatgaagaaagtgtagct
tctctgagtacaacgcaagatgagacgcaagacagtttccagctgaacaatgggacacca
aattccagttacctcctacaaggtggctacatgttggcagcatcctattggccaaaggat
cgagttatgattaaccggctcgatagtatttgtcaaacagtgttgaaaggtaaatggcct
tcagcaagaaggaactatgacagcaatacggtggcatctttctacacaaccaagcttctg
gatagtccgggtgcagctgcagattacagtgagcccagtgcaccaacaccccctcttgca
ggtgttaaagaagaatatgatcagtcaccacagatgtcaaaggtgaagaagcatgtacga
gaaaaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcagaag
cagggactgtctcagaaaaggccatttgaaagcgaggaaggtgcattgggacagcagcaa
tacctggctcggctacgtgaactccagaacgcttcagaaaccagcctcgtcaacttcccc
aaatcacttcctgaatcgggtacttccagtcacataacagccagcgccaacggagtgata
gtcgacagtcagcctgcagtcaaaaagagaaggggaagaagaaagaatgtggaaggagtt
gatgtcctctttataaatagaaataagcagcctaaccatgttaatccaggtattaactcc
tgccaagttgctgcaggaataaacccagcgctcacctacacgcagtcacaaggcatgctt
gatgcagagagtccagttcctgtaattaacctaaaagatggaacaaggcttgcaggtgat
gatgcccccaaaaggaaagatttagaaaggtggctgaaagaacatcccggctatgttgaa
gatttaggagcttgtattcctaggacgcagctgcatgatgggaggcccaaacaaaaaaga
catcgttgtcgaaaccctaataaactggatgttaatagtttgactggtgaagaacgtgtt
cagctcataaatagaagaaatgcaagaaaggtggggggtgcatttgctccccctctgaag
gatttgtgcaggttcttgaaagaaaatccagagtatggagtggctcctgaatggggagat
gttgtaaaacagtctggatttctcccagaagttatgtttgaccgtattctcactgggcct
gttgtgcgggaagaagtaagccggaggggaaggcgcccgaaaagtgagattgctaaggca
acagcagctgcagccgctgccactgctgcgagcgtgtcggttaaccctctgctagctaac
ggattgctgccgggagtggatctgcctagtctccaggccttacaacaaaacctgcaaaac
ctgcagtcgctgcaagtaacggcgggcctaatgggaatgccggctggcctaactgctgga
ggagacgccaagaacatggccgccatgttccccatgctgctgtcagggatggctggatta
ccaaacctgctgggcatgagaggacttctaaccaagtctacggagtctatttcagaggat
aaaaagggaaacgattcaaaagaggcggatataaagaaagaaaggacagaagaccaaaat
acagatactggtggtgaaaactctgttttgagctctccttcgacatcctctgctgctgca
gctgccaatcctctctctcttaacccattacttttgtccaacatattttatccagggatg
cttctcactccaggccttaatcttcataacccagctttgtctcagtctaatatttttgat
gtacaggacagtgaaagtaatgacacgggctcagccaagcccacagaagaaaaggaggaa
aattctagggttagagatcaggaagacaaagggggaacagagccaagctctcacaacgaa
aacagcacagatgagggttcagagaaagcagatgcttcatctggatctgatagtacatca
tcttcatctgaggattcagattctagtgatgaagactga
DBGET
integrated database retrieval system
