Aythya fuligula (tufted duck): 116494405
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Entry
116494405 CDS
T07966
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful04382
Cornified envelope formation
aful04510
Focal adhesion
aful04512
ECM-receptor interaction
aful04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116494405 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116494405 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116494405 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116494405 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aful04147
]
116494405 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
aful00536
]
116494405 (COL4A6)
Exosome [BR:
aful04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116494405 (COL4A6)
Glycosaminoglycan binding proteins [BR:
aful00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116494405 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116494405
NCBI-ProteinID:
XP_032052179
UniProt:
A0A6J3DNG8
LinkDB
All DBs
Position
13:complement(2745798..2881723)
Genome browser
AA seq
1697 aa
AA seq
DB search
MGCAGLLWVLLLLVCLGMEPASGGGKKSYTGPCGGRDCSAGCKCFPEKGARGRPGPIGIQ
GPIGAPGFTGPEGLPGAKGERGAVGPPGPPGHKGIKGSMGVPGFQGINGIPGHPGQSGPR
GLPGLDGCNGTIGSPGVPGTDGFPGIPGLPGRPGPKGLKGEPVFAQGSLKGMKGENGLPG
LDGISGPKGFPGPTGSAGPIGLPGLQGPVGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGP
PGPPPSTGILEFMGFPKGKQGEKGEPGLQGLPGEKGLPGLPGFGGVGEKGEKGVPGLPGG
RGLLGLDGSDGIPGRKGHPGVPGYPGLDGVEGTKGELGDIGPPGPPIVVDREGVVISGAP
GDPGNPGIPGPPGDEGGSGLPGLPGAPGFPGLERDGMGPGGSPGIPGVKGEMGEPGRATI
GLPGSPGRDGLPGLPGAPGLPGSSRPSFLPGAILDGRTGAPGEPGQRGLPGALGPKGFKG
EAGDCACDGGVMRPGVKGISGPQGPTGIPGVPGIKGVSGDPGTVGAPGLRGPLASAGQQG
LPGLKGEKGDSSYATGRGARGDRGATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGALGF
PGEKGLPGLPGTKGHHGEAGSPGVGYPGPSGVRGPPGDPGLDGLPGQAGLPGPPGITLPC
IVPGAYGPPGIPGFPGLPGPKGSKGFPGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGPR
GEQGSQGLPGLDGTDGLPGKMGPSGLAGAKGAPGDVFGAESGAQGERGRPGLPGDKGFAG
DIGFPGPKGLDGRPGLLGIKGELGNPGYSGVPGLRGPPGPGGPFGIKGKPGPLGSVGLAG
APGCQGLPGVKGLAGDVGPQGPAGMKGFPGLDGAPGSPGERGFLGPPGPFGHDGRPGFSG
PKGEKGSSGLLGFPGMPGLPGVPGVNGFKGAPGAAGGIGSPGVLGLQGQKGDRGDVGPPG
LPVLGPPQQALQFKGDKGDPGLAGLGGFPGPRGDKGIPGSRGQPGLPGPAGSASRERGFH
GEPGFPGPSGQPGLPGQKGARGIIGFPGMPGERGSDGITGPLGFPGPIGLPGPKGDQGES
LGVSGSAGVKGERGDPGFPGERGREGLKGEAGFPGSTGVNGLKGGPGDVGQEGPAGIPGN
AGLRGIPGPPGPPGQPGSVGFPGARGTAGPKGFHGFPGLNGLNGLPGTKGSPGTPGLSEV
GLKGPAGLPGVKGEEGSPGLGRGALGFPGPKGSSGDMGPPGPVGLPGLPGSPGVSLPSDI
RGRPGDAGHPGLDGSSGLPGPPGPRGPPGPASDQGDTGSPGFPGVLGLRGIKGDVGPTGP
IGLPGVSGFKGVRGEPGLMGMPGKDGPPGDPGYPGLKGEMGRRGLPGRPGAPGITPQPEE
ITAPAGLPGLPGIDGVPGFDGDPGFQGPVGKPGTKGLPGRSGLKGHDGLPGSPGTVGDPG
PVGTPGPQGFEGVAGKPGSLGLPGMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYS
LLYVEGQEKSHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMM
PVDSAQIPQYISRCSVCEAPSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGG
GQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQSQQFVSAPPSETLKA
GQLRTRVSRCQVCMKNL
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcgctgggctgctgtgggtgctgctgctgcttgtctgcctgggcatggagccg
gcgagtgggggtggaaagaagtcttacactgggccatgtgggggccgtgactgcagtgct
ggatgcaaatgttttccagagaagggcgcaaggggtcgaccaggaccgattgggattcaa
ggaccaataggtgctcctggatttactggtccagaaggtttgccgggagcaaaaggtgag
agaggagcagtgggcccccccggaccacctggacacaaaggcatcaagggctcaatggga
gttccaggatttcaaggaatcaacgggatcccaggtcaccctggccagtctggacccaga
ggtctgcctggccttgatggctgcaatggtaccattgggagtcctggtgttcctggaaca
gatggatttcctggcattcctgggctgccgggtcgtcctggcccaaaaggtcttaaagga
gaacctgtttttgctcaaggcagccttaaaggaatgaagggagaaaatggtcttcctgga
ctggacggaatttctggcccaaaaggttttccaggtccaacaggttctgcaggccctata
ggattaccaggtttgcaaggtccagtgggtccccccgggccaccaggtcccaaaggtaat
atgggattaggctttcaaggagagaaaggagaaaagggagacgtaggactgcctggccct
ccaggtcccccaccatccactggaatactagaattcatgggattccccaaagggaagcaa
ggagaaaagggtgagccaggccttcaaggattgccgggcgaaaaaggattgcctggcctg
ccgggctttggaggtgttggagaaaaaggagaaaaaggtgtgcctggcttgccaggtggc
aggggtcttctgggactggatggatctgatgggattccagggagaaagggtcatccaggt
gttcccggctatccaggactggatggagttgaaggcacaaagggtgaattaggtgacatc
ggtcccccaggccctcctatcgttgttgacagggaaggtgtagtcatttcaggtgcccca
ggtgaccctggaaacccaggaatacctggtcctccaggagatgaagggggcagtggtttg
ccaggccttccgggagctccagggtttccaggcctggagagagatggaatgggccctggg
ggatctccagggattccaggtgtgaagggcgaaatgggagaaccaggaagagcaacgatt
ggattaccaggcagtcctggtagagatggtttaccaggtctgccaggagcaccaggattg
cctggctcatcacgcccttcattcctcccgggcgcaatcctggatggaaggactggggcc
cccggggagcctggacagagagggcttccaggagctttgggtccaaagggtttcaaagga
gaggcaggtgattgtgcttgtgatggaggagttatgagacctggtgtaaaaggcatctcg
ggtccacaaggtccaacgggaatccctggtgtgcctgggatcaagggcgttagtggagac
ccaggcactgtgggtgcaccaggactgcgaggccctctggcttcagctggccagcaaggt
cttccaggccttaagggagaaaaaggagattcatcctatgcaacaggcagaggtgctcgt
ggggaccgtggtgcgacagcgcccagaggaccttcaggcatcccaggaactcctggcagg
gatggacttccaggtctgccaggcccgccgggccctccaggggatggtgcactgggattc
ccaggtgaaaaaggactgccaggattacctggcaccaagggccatcatggagaggctggt
tctcctggcgttggatatccaggtcctagtggagttcgtgggccgccaggtgacccaggg
ctggatggccttccaggacaagcaggtcttccaggacccccaggtatcaccttgccctgc
atagtccctggagcgtatgggccccctgggattcccggcttcccaggattgccaggtccc
aaaggcagcaaaggctttcctggcattccagggcaacctggattacatgggtcaaaagga
cagccagggtctccaggaataattggcttgcaaggggaacctggcttccctggacctcga
ggagagcaagggtcccaaggacttccaggactggatgggacagatggtttgcctgggaag
atgggtccttcaggcttagctggagctaaaggagctcctggagatgtgtttggtgctgag
agtggagcccagggagagcgtggccgacctggactcccaggtgataaagggtttgcaggt
gatattggatttccaggaccaaaagggctggatgggagaccaggcctcctaggtattaaa
ggcgaactgggtaatccaggctattccggtgtccctggattgcgaggacctcctggccct
ggaggtccttttggcattaagggaaaaccaggaccgttgggatcggttggcctggcagga
gctccaggctgtcaaggacttcctggagtcaaaggattggctggggatgtaggtcctcaa
ggccctgccggaatgaaaggcttcccaggtcttgatggtgctccaggatctcctggggaa
agaggattcttggggccacctgggccttttggtcacgatggacgtccaggtttctctggg
ccaaaaggtgagaaaggatcttctggcctgcttggtttccctggcatgccaggcctgcct
ggtgtccctggggtcaatgggtttaaaggagctcctggcgcagctggaggaattggaagc
cctggagttctgggactgcaaggtcaaaaaggtgacagaggcgatgtaggtccacctggt
cttcctgttcttgggcctccacaacaggcactgcaattcaaaggagacaaaggagatcct
ggattagctggacttggaggattcccaggacctagaggtgataaaggaatcccgggaagc
cgtggacagccgggtcttcctggacctgctgggtcagcaagcagagagagaggttttcat
ggtgagccaggcttcccgggtccatctggacagcctgggctgccaggacagaagggtgca
cgtggcatcataggatttccaggaatgccaggagagaggggttcagatggtatcacagga
ccacttggattcccaggacctattggcctccctggtccaaagggtgaccagggagagtct
cttggtgtttctggcagtgctggagtgaaaggagagcgaggggacccaggcttcccaggg
gagagaggcagagaagggctcaagggtgaagctggctttccaggaagcactggagtgaat
gggctcaaaggtggcccaggagatgttggccaagaaggaccagcaggaattcctggaaat
gctgggctgagaggaatccctgggccaccagggcctccagggcagccgggatctgtcgga
ttccctggggctcgtggaacagcaggacccaaagggtttcatggatttccaggtttaaat
ggtctgaatggcttgccaggcacaaaagggtctcctggaacaccaggtctgagtgaagtt
ggactgaaaggccctgcaggtctcccaggtgtgaagggtgaagaaggttctccaggcttg
ggtagaggtgctctaggatttccgggaccaaaaggctcatcaggagacatgggtcccccg
ggtcctgtgggactgccaggcttgccaggaagtcctggagtttctcttccttctgatata
cgtgggaggcctggggatgctggccacccaggacttgatgggagttcaggtcttccaggt
cctccaggaccacgagggccccctggcccagcttctgaccaaggtgacacaggcagtcca
ggtttccctggtgtgcttggcttgcgaggcattaagggcgacgtgggacccactggtcca
attgggctccctggagtgtctggattcaaaggtgtaagaggtgagcctggacttatgggg
atgccaggtaaagacgggcctccaggggatcctggttaccctggcctgaaaggtgaaatg
ggccgtcgaggtctccctggccgaccaggggctccaggtataaccccacagccagaagaa
atcacagcccctgcaggcttacctggtctgccggggattgatggtgtgcctggctttgac
ggagatcctgggttccaaggcccggttggaaaaccaggtacaaaaggtctgccaggcaga
tctggtttgaaaggacatgatggcttacctggatcacctggcaccgttggggatccaggc
cctgtgggtaccccaggaccacagggatttgaaggtgtcgctggaaagccaggctcgctt
ggtttgccaggaatgccgggtcggagcgtgggtgttgggtacaccttagtgaagcacagc
cagtcagaccaaatcccaccttgccccataggaatgaacaagctgtgggatggctacagc
ttactgtacgtggaggggcaggaaaaatcacacaaccaggatcttgggtttgctggctcc
tgtttgcctcgcttcagcaccatgccttttatttactgcaacatcaacgaagtgtgctac
tatgccagccgaaacgacaagtcctactggctctccaccactgctcccatccccatgatg
ccggtggacagcgcgcagatcccccagtacatcagccgctgctcggtctgtgaagcgccc
tcccaggctgtggccgtgcacagccaggatatcaccatcccccagtgtcccctcggttgg
cgcagcctctggataggatactccttcctcatgcacacagcagctggtgcagaaggtgga
ggtcagtccctcgtctcacccggttcttgcctggaggatttccgcgctactcccttcatt
gaatgcaacggtgccagggggacgtgccattactttgcaaacaaatacagcttctggctc
acgaccgtcgaacagtcacagcagtttgtcagcgcccctccctcagaaaccctgaaagca
ggacagcttcgaacaagggtcagccgctgccaggtgtgcatgaagaacttgtaa
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