Aythya fuligula (tufted duck): 116494595
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Entry
116494595 CDS
T07966
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful04382
Cornified envelope formation
aful04510
Focal adhesion
aful04512
ECM-receptor interaction
aful04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116494595 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116494595 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116494595 (COL4A5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116494595 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aful04147
]
116494595 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
aful00536
]
116494595 (COL4A5)
Exosome [BR:
aful04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116494595 (COL4A5)
Glycosaminoglycan binding proteins [BR:
aful00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116494595 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116494595
NCBI-ProteinID:
XP_032052429
UniProt:
A0A6J3DP52
LinkDB
All DBs
Position
13:2881922..2968104
Genome browser
AA seq
1698 aa
AA seq
DB search
MEPRWWSRSPAAGCLVVLLLGCWRLDEAAAAACHGCTSVSKCDCSGVKGEKGERGFPGLE
GQPGLPGFPGPEGPPGPRGPKGDDGLPGPIGPKGIRGPPGLPGFPGTPGLPGLPGQDGPP
GPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGEAGEIITSLLPGQKGDPGFP
GLPGIPGPPGSTGIPGPVGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQG
PPGPPGQIGEQKRPNDIEFQKGDQGIPGDPGPPGLPGPQGPPGLPGGVKGEKGEQGEPGK
RGKPGKDGEPGQPGRDGLPGGPGVNGAPGRDGEKGEKGDTGPPGPPGSVISRPGIDATVG
PKGSKGLPGLPGAKGERGFSGRPGPPGLPGSPGVTTVGPPGPPGLPGERGQKGDPGLPGV
SIPGQPGLDGPRGPPGPPGPPGPPAPSVPPGEGLCEQGPPGPPGIPGQQGFTGERGQKGD
QGDTCFNCIGTGISGPPGERGPPGPPGSPGSPGFPGPKGEKGLPGLTGLVGPPGFPGPPG
APGRPGPKGDPGDVLTSPKMKGEKGDPGFPGPPGLPGIDGTPGRDGLPGLPGPKGEPGSV
AFKGEMGIPGDPGIPGLPGDKGLPGPPGFGPQGSPGEKGIQGVSGRPGPPGVPGPKGEPG
QTITEPGVPGPPGPPGRNGDPGLPGDPGQPGQRGLSGIPGAKGEPGIPGIGLPGPPGPKG
FPGTPGPPGAPGTPGRPGLDGPPGPPGFPGQKGDRGFGVPGPTGPPGPPGIKGVQGPKGD
PGFPGNPGLPGRAGFDGTPGPKGDPGPSGPPGLPGPPGIPGIGGQGPPGPPGPPGPVGPP
GSPGLQGVPGEKGDPGPPGFDVPGPPGDQGTPGYPGPPGLPGPQGSPGPPGRDGIPGFPG
AKGEMGVMGAPGPPGPPGTPGRNGLPGSKGNNGLPGPPGPPGPVGQKGIKGEAGLPGPPG
KIDPKQLGAKGEKGEPGVPGIPGLSGQKGYQGLQGDPGPPGLSGPPGAPGLPGIKGDTGL
PGQPGPTGPPGLKGAMGEMGLPGPPGIKGSQGIAGRPGQPGPAGFPGLKGEKGDPGLSSI
GIPGLPGPKGDLGLPGYPGSPGSKGVAGNPGLPGLPGNPGAKGEPGLPGFPGTPGIPGPK
GIEGPPGNPGLPGPPGPVGDIGRPGPPGPPGEKGQPGRDGIPGPAGQKGEPGLPGFGRPG
PPGLPGLSGQKGELGLPGPPGPPGLPGLKGEPGFQGFPGLQGPPGPPGLPGPPLEGPKGS
PGPPGVPGRPGPSGPPGSPGPEGPRGPPGSGGLKGEKGNPGQPGPPGLTGQKGDQGPPGR
QGDPGRPGLNGMKGDPGVPGVPGFPGMKGPTGPAGPAGLTGSQGLPGPPGPPGLPGTIGR
SIVVKGDPGPPGPPGQPGSKGPPGLPGPQGLPGPIGAPGDPGRDGLPGFDGPAGRKGERG
LPGQPGSRGIQGPPGPDGLQGPPGPPGTASVAHGFLITRHSQTRDTPLCPQGTSRIYDGF
SLLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPM
SMEPLTGKSIQPFISRCVVCEAPAMVIAVHSQTIQIPSCPPGWDSLWIGYSFMMHTSAGA
EGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVSEMFSKPQSETLK
AGDLRTRISRCQVCMKKT
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atggagccgcggtggtggagccgcagcccagccgccgggtgcttggtggtgctgctcttg
gggtgctggcggctggacgaggcggcggcggcggcgtgccatggatgtacatcggtatcc
aaatgtgattgcagtggagttaaaggtgaaaagggtgaaaggggattcccaggcttggaa
ggacagccgggtttgcctggatttccaggaccagaagggcctcctggtccaagaggtcca
aagggtgatgatgggcttccaggacctattggacccaaaggaattagaggaccgccaggg
cttccaggatttccaggaacaccaggacttcctggattaccaggacaagatgggccacca
ggacctcagggtatcccaggctgcaatggaactaagggagagcgtggattcccaggcagt
ccaggttttcctggcctacaagggcctcctggacctcctggcctgccaggtatgaagggt
gaagcaggtgaaataattacatctttgctaccaggacagaagggcgacccaggttttcca
ggtcttccagggatacctggcccacctggctccacgggaataccaggtccagttggccct
ccagggcccccaggtttgacgggacctcctggtccaccagggctaccaggacctaagggt
aatatgggcttgaatttccaaggacccaaaggtgaaaaaggtgaacaaggtcttcaggga
cctccagggccaccaggacaaattggagaacagaagagaccaaatgacattgagtttcag
aaaggagatcagggtattccaggtgatccaggcccaccaggacttcctgggccacaaggc
cctcctggtcttcccggtggcgtaaaaggtgaaaaaggtgagcaaggagaaccaggcaaa
agaggaaagcctggcaaagatggagaacctggtcagcctggtagggatggtttacctggt
gggcctggagttaatggtgctccaggaagagatggtgaaaagggtgaaaaaggtgacact
ggtcctcccggtccccctggaagtgtcatttcaagaccaggcattgatgcaacagtggga
ccaaaaggtagcaaaggattgccaggactcccaggagccaaaggggagcgtggattctct
ggtaggccaggcccacctggcttgccgggttctccaggggtcactactgttggtcctcct
ggcccacctggcttacctggtgagagaggacagaagggagatccaggtttacctggtgtt
tccattcctggacagcctggacttgatggaccacggggacctccaggacctccaggtcct
ccgggaccacctgcaccatctgttcctcctggtgaagggttatgtgaacaggggccacca
ggtcctccaggaattccaggacaacaaggctttacaggggagcgaggccaaaaaggtgat
caaggagacacatgcttcaactgtataggaactggaatatctgggcctcctggggagaga
ggaccaccaggacctccaggtagtccaggttctcctggttttcctggaccaaaaggtgaa
aaggggcttccaggattaactggccttgtagggccaccaggcttcccagggcctccaggt
gctcctggaagacctggtcctaaaggagacccaggggatgtcctgacttctccaaaaatg
aaaggtgaaaaaggagaccctggcttcccaggacctccaggtcttcctggcatagatggt
actcctggacgagatggactgccaggtctgcctggccctaagggggaacccggcagtgtt
gcattcaaaggagaaatgggaattccgggtgacccaggaataccaggtcttcctggagac
aaaggacttcctggacctcctggttttggtccacaaggctcacctggtgaaaagggcatc
caaggtgtatcaggtcgcccagggcctcctggagttcctggtccgaaaggtgaacctggt
cagactattacagaaccaggagttcctggcccccctggtcctccaggaagaaatggtgac
ccaggccttccaggggatcctggtcagccaggtcagcgagggttgtcaggcatcccaggt
gcaaaaggagagccaggtattcctggcattggacttccagggccaccaggcccaaaaggt
ttcccaggaacaccaggcccccccggagctccaggaactccaggccgacctggtctagat
ggaccccctggaccacctggtttcccaggccagaagggggatcgtggatttggagttcca
ggaccaactggacctccaggaccaccaggcataaaaggagttcaaggacccaaaggtgat
cctggcttcccaggaaaccctggtcttccaggacgggcaggttttgatggaactccaggg
cccaaaggtgaccctggaccaagtggaccaccaggactcccaggcccaccgggcatccct
ggcatcggaggacaaggtccacctggacctccgggacctccaggtcctgttggcccacca
ggttccccagggttacaaggcgttccaggtgagaaaggagatccaggtcctccaggcttt
gatgttcctggtcctccaggtgaccaaggaaccccaggctatccaggaccccctggcctc
ccaggacctcagggttcacctggaccaccaggccgggatggcattcctggatttccaggt
gccaaaggtgagatgggcgtcatgggagcccctgggcctccaggccccccaggaactcct
ggaagaaatggccttcctggctcaaaaggtaataatggattacctggcccacctgggcct
cctggaccggtaggacagaaaggcatcaaaggtgaagcaggcctgccaggtccacctgga
aaaattgatccaaaacaactaggagcaaaaggagaaaaaggcgagccaggtgttccaggt
attcctggtctatcagggcagaaaggttatcaaggtctccaaggtgacccaggaccacca
ggacttagtggtcccccaggtgcaccagggttgccaggcatcaaaggagacacggggctt
cctgggcagccaggaccaacaggacctccagggttaaaaggtgccatgggagagatgggc
cttccaggtcccccagggattaaaggcagccaaggaatagcaggacgtccagggcagcct
gggcctgctggatttcctggattgaaaggggagaaaggtgaccctggactttcaagcatt
ggtattcctggtctccccggtccaaagggtgatcttggtttgcctggatacccgggcagt
ccaggcagtaaaggtgtagctggaaatcctggtttgcctggactgccaggcaatccaggt
gcaaaaggagagccaggccttcctggattcccaggcacgcctggaattccaggaccaaaa
ggtatcgaggggcctccgggtaaccctggtctgcctggaccacctgggccagtaggtgat
attggtcgtcctggccctcctggtcctccaggggaaaagggtcagcctggtcgagatggc
atccctggaccagctggtcagaagggcgagccaggtctaccaggttttgggcgcccagga
cctccaggactcccaggattatcagggcaaaaaggtgaactggggttacctggcccacca
ggaccacctggacttccaggtctgaagggagaaccaggtttccaaggattccctggccta
cagggtccaccaggtccaccaggattaccagggccacctctggaaggtcctaaaggtagc
cctggcccaccaggtgttccaggaagaccaggtccctcaggtcctccaggttcgccaggc
ccagaaggtccgcgggggccaccaggcagtggaggacttaaaggggaaaaagggaatcca
ggtcagcctggcccacctggcctgactggtcaaaagggagatcaaggaccacctggacgc
cagggggatcctggtcgtcctggtctgaatggaatgaagggcgatcccggggttccaggc
gttccaggattcccaggtatgaagggtcccaccggacctgcaggacccgctggcctcacg
ggcagtcaaggattaccaggcccgccaggtcccccaggtttaccaggtaccattggacga
agcatagttgtcaaaggtgaccctggtcccccaggtcctccaggacagcctgggtcgaaa
gggccacccggattgccaggaccacagggattgccaggtccaattggtgctcctggtgat
ccaggcagagatggtctccctggttttgatggtccagcaggacgtaaaggagagagaggt
cttccaggccagccaggttcacgaggaatacagggcccccctggtcctgatggtttacaa
ggcccacctgggcctcctggaacagcttctgttgctcatggattccttataactcggcac
agtcagactagagatacaccactttgtccacaaggaacgtcaagaatatatgatggattc
tctcttttatatgtgcaaggaaatgagagagctcatggccaggatttgggtactgctggg
agctgccttagacgttttagcaccatgcccttcatgttctgcaacatcaacaacgtttgt
aattttgcatcaaggaatgactattcctactggctatcaactccagagccaatgccaatg
agcatggagcccctgactgggaagagcattcagccattcattagccgatgtgttgtgtgt
gaagctcctgctatggtgatagctgtccacagtcagaccattcagattccttcgtgtcct
ccaggctgggactccctttggattggttactcttttatgatgcacactagtgctggagca
gaaggctctggacaggccttggcgtcgcctggatcctgtttagaagaattccgctcagct
ccgtttattgagtgccatggtcgtggcacttgtaactactatgccaattcatacagtttc
tggctggcaactgttgaagtgtcagaaatgttcagtaaacctcagtcagagacactgaaa
gctggagacttgaggacacgtattagtcgttgtcaagtttgcatgaagaagacgtaa
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