Aythya fuligula (tufted duck): 116495073
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Entry
116495073 CDS
T07966
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116495073 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aful03019
]
116495073 (PARN)
Enzymes [BR:
aful01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116495073 (PARN)
Messenger RNA biogenesis [BR:
aful03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116495073 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
116495073
NCBI-ProteinID:
XP_032053160
UniProt:
A0A6J3DT58
LinkDB
All DBs
Position
15:17484263..17551293
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AA seq
659 aa
AA seq
DB search
MEVIRSNFKDNLSKVCEAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNTTKCPVTIPEDQKKF
IEKVVEQIEELLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVDDEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTSSEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCVNRNKLYSNVTEELLFRKCCIVVATSFTGTSTVGKRSMSPIQEETG
SDDVEEGEDPEYNQTDSCAEPLPDSKKRDKKFKKIKKEQVPAGSFTSSSTEIFEVPETW
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcagaagcaattttaaggataacctgagcaaagtctgtgaagccatcgaa
gaagcggacttcctggccattgatggggagttttcagggatcagcgatgggccttctgtt
agtgcattaaccaatggctttgacactccagaagaaaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgaccacactgaa
gagaagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagt
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaacggaattccgtatttaaatcaggaagaagaaaga
cagctaagggaacagtatgatgaaaaacgttctcaggccaatggtgcaggatctctctcc
tatatttctcccaataccacaaaatgtcctgtcacaattcctgaagatcagaaaaaattc
attgagaaagtagtggaacagatagaagaattgttaaagaatgaagaaaatgaaagtttg
gaactggagccatgtacaggatttcagaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtatccatgttgaaactctggagtcagataagaaagagagatatattgtt
attagcaaggtagatgatgaagaacgaaaaagaagagaacagcagaaacaagcaaaggaa
caggaagaactgaatgatgcagtaggattttccagagttgttcatgctattgcaaattct
ggcaagcttgttattgggcacaacatgctgcttgatgttatgcatactatacaccagttc
tattgtcctcttcctgatgacctaagtgagttcaaagaagtaacatcatgtgtctttccc
cggctattggatacaaaactgatggcaagtacacaaccttttaaggagatcattaataat
acgtcccttgcagaactggaaaaacgtttaaaagaagttccattcagtcctcctaaagtt
gaaagtgcagaaggatttccaagttatgatacctcttctgaacagcttcatgaagcggga
tatgatgcttacattactggactgtgcttcatctccatggctaatttcctaggttcgttc
ctcagtcctccaaaaaatcacgtgtctgctagatcaaaactcatagaacccttttttaac
aagctatttcttatgagagtaatggacattccatatctgaatttggaaggaccagactta
cagcctaaacgagatcatgttcttcatgttacttttcccaaagagtggaagacgagtgac
ctttaccagctttttagtgcctttggtaacattcaggtgtcgtggatagatgacacatca
gcatttgtatcattaagccagccagaacaagtacaaatagctgtaaacaccagcaggtat
gctgaaagttataggatccagacatatgctgaatatgttgagaaaaaacatgaagaaaaa
caggcaaagagaaaatgtacagaagatagttggaaggagatggagagaaagcggttaaaa
actcaatgcacaccttacgtttcccagagtcgatactactgtgttaacagaaacaaacta
tattccaatgttacagaggaacttctcttcagaaaatgctgtatcgtagtagctacaagt
tttacaggtaccagtacagtgggaaagagaagcatgagtcctattcaggaagaaactggt
tctgatgatgtggaagagggagaagatccagaatacaatcagacagactcctgtgcagag
cccctcccagatagtaagaagagagacaaaaagttcaaaaagatcaagaaagaacaagtt
ccagcaggaagcttcacaagtagttccactgaaatttttgaagtccctgaaacatggtag
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