Aythya fuligula (tufted duck): 116495900
Help
Entry
116495900 CDS
T07966
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
aful
Aythya fuligula (tufted duck)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
CBM_4_9
DUF4998
Motif
Other DBs
NCBI-GeneID:
116495900
NCBI-ProteinID:
XP_032054527
UniProt:
A0A6J3DXY7
LinkDB
All DBs
Position
16:13898073..13942267
Genome browser
AA seq
1371 aa
AA seq
DB search
MLIRTCFLFACLPVASHVWGRGGQGSGRLKLTVLSEDRLQMKWKETEGNINGYKVRVKPM
AGDSEQEVMLKTKTPKATVGGLSPTKEYTLQVYVLNGSQEALFAKRKFVIEDLKNASQAR
NNRRNAGAALGKNLTSVGSPAAEHSGGAEPTPSPPNAVLVQPAKDRAEKKRQKGAQPKGS
GEATRSQLHAEASVTQTPPPAPKSSQRTPASSERESVGKEKPTKDSLRRGSQFQCDTSAM
IDIVLLVDGSWSIGRSNFKLIKEFLSTLISPFSIAQDKIRVGLSQYSSDPRTEWDLDAYT
TREQVLEAVRNLRYKGGNTFTGLALTHVLEQNLKPDAGARLEAEKLVILLTDGKSQDDAN
LAAQTLKNMGIEIFAIGVKNADEAELKQVASEPLELTVYNVLDFPLLSNLVGRLTRVLCA
RIKEKSKENAVPLSSPRSLRVSELSHNSMRLSWKAAPGATQYLVLCSAAPDGAEDYTMEV
KVAQPEVLLDGLSPSTEYSVAVYAMYGEDASDPASIQETTLPLSPPRYLSFSELSHASVR
VSWEAASQAVKAHHVTYEASGGSNTGEVEVPGTATSTVLRPLSSLTQYFISVRSTYDEGD
SFPITGNVTTLKVPPPRALKVTELSGNSLRLQWEAVAASDVVVYQIKWSTAAGEKPQELS
IAGNVATAILPGLQKNTDYKISIWAYYKDGARSDTVSIQHRTNSRSPPTNLFIDSESPTS
LQVHWKPPEGRVQHYKITYSPVSDTGAQQTIMASGKSSSVTLQSLLPDRAYKVIVSAVHY
TGESESTSATGRTAPVMSKLPSIRGFVPSKTEACPTISSAAGSIRGFDMMEVFGLVEKEY
SSVKGIAMEPFIFSGSRTFTLFRDTQLTQRTSDVHLFAIPPEHTISFLLRLLPETPKEPF
AVWQITDEDFQPLLGVNLDPSKKSLTYFNHDYKADLQEVSFDQQEVKKIFYGSFHKVHVA
VSRFKIKLYLDCKKIAEKPINTVGSISTAGFIMLGKVTRTRGPRSGSASFQLQSLQIVCN
SLGAEEDRCCDLPALRDEETCPTLAPACSCTSGHPGLPGPPGPPGSPGRRGPQGEQGEPG
PKGEPGPPGKVGPAGPSGQQGSPGSQGITIQGPVGPPGIKGEKGDTGSPGVQGIPGVQGA
PGRDGLQGAKGVRGLEGTAGPPGPPGPRGFQGVTGSRGSSGEKGPPGDVGPTGLPGPKGE
RGEKGEPQSLATIYQLVTQACERMIQTHVLKFDSFIHEHARKPVPVWEERLKPGEPGPPG
PPGPPGSNGERGENGIPGQPGKDGYPGERGAPGPKGEKGMPGVNEEGIQGPRGRTGPPGE
VVLGKPGPKGYPGNTGPQGFPGVRGQPGQSGYPGGCDISGCYGADRRDFIP
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgctgattcgcacttgtttcctttttgcctgcctgcccgtggcgagccatgtctgggga
cgagggggccaagggtcaggccgcctgaaactcacggtcctctcggaagacaggctccag
atgaaatggaaagaaaccgaggggaacatcaacggctacaaagtgcgggtgaaacccatg
gcaggggactcggagcaagaagtcatgctgaaaaccaagactcccaaagccaccgtgggg
gggctgagccctaccaaggaatacacactgcaggtctacgtgctcaacggctcccaggaa
gccttgtttgccaagaggaaatttgtgatagaggacctcaaaaatgcatcccaggctaga
aacaaccgaaggaacgcgggagctgcattgggaaagaatctcacctctgtggggagccca
gcagctgagcacagtgggggcgcagagcccaccccttcacccccaaacgctgtcttggtg
cagccagcaaaggacagagctgagaagaaaaggcagaagggggctcagcccaagggctca
ggagaagccacgagaagccagctccatgcagaggccagtgtcacacaaacaccaccacca
gccccaaaatcatcccagcgcactcctgcaagctcggagcgagagtctgtaggaaaagaa
aaacccacaaaggattcactgaggagaggttcccagtttcagtgtgacacatctgcaatg
attgacatcgtcctgcttgtggatggatcgtggagcatcggacgcagcaacttcaagctc
attaaggagttcctgagcactttaatttccccattcagcattgcccaagacaagataaga
gtagggctgtcccagtacagcagcgatccccgcacggagtgggacctggatgcttacacc
acgagggagcaagtgctggaggcagtgaggaatttgcggtacaagggtggcaacaccttt
acaggcctggcgctgacccacgtcctggaacaaaacctgaaaccagatgctggcgcccgg
ctggaggccgagaaactggtaatcctcctgactgacggaaaatcccaggatgatgccaac
ctggctgctcagaccttgaaaaacatgggcatagagatatttgccattggggtgaagaac
gcagacgaggccgagctgaagcaggtggcctcggagccgctggagctcacggtgtacaac
gtgctggatttccccctgctcagcaacctggtcggcaggctcacccgggtcctgtgcgcc
aggatcaaggagaagagcaaggaaaatgcagtgcctctgtcttccccccgctccctgcgc
gtctccgagctgagccacaacagcatgaggctgagctggaaggcagccccgggagccacg
cagtacctggtgctctgctctgcagcccctgacggagcagaggactatacgatggaggtg
aaggtggcccagcctgaggtcctgctggatgggctgtcgcccagcacagagtactctgtc
gctgtgtatgcgatgtacggggaagatgcaagtgatccagccagcatccaggaaaccacc
ttgcccttgagtcccccccgatacctgagcttctccgagctcagccacgcgtccgtccgt
gtcagctgggaggctgcatctcaggcggtgaaggctcaccacgtcacctacgaggcgagc
ggagggagcaacaccggggaggttgaggttcctggcactgcaacatccaccgtcctgagg
cctttgtcctcccttacccagtacttcatcagtgtcaggtccacgtatgatgaaggcgac
tccttcccgattactggcaatgttaccaccttaaaggtccccccgccgcgggcactgaag
gtgaccgagctctccgggaacagcctgcggctgcagtgggaagctgttgctgcctctgac
gtggttgtctatcagatcaaatggagcacagctgctggggagaagcctcaggagctctcc
atcgctggaaatgtggcaactgctatcctgccaggcttgcagaagaacacagactacaaa
atatccatctgggcctactacaaagatggtgctcgaagtgacacggtctctattcagcac
aggaccaattcccggagcccacccaccaacctcttcatcgactccgagagccccaccagc
ctccaggtccactggaagccccccgagggccgtgtacagcactacaagatcacctacagc
cctgtctctgataccggtgctcagcaaacaatcatggcttctgggaaaagcagcagtgtg
accttgcagtcgctgctgcctgaccgagcctacaaggtcatcgtttcagctgtccactac
acaggggagagtgagagcacatctgcaacgggccggacagctcctgtgatgtctaaactg
ccttcgatacgaggattcgtcccatctaaaacagaagcctgccccaccatcagttctgct
gcaggttccatacgagggtttgatatgatggaagtgtttggcttagtagagaaggaatat
tcctccgttaaaggcatagccatggagccgttcatattcagcggatcccgcaccttcacg
ctgttcagggacactcagctcacccagaggaccagcgacgtccacctctttgcaatccca
cctgagcacaccatcagcttcctcctgcgcctcctgcccgagacccccaaggagcccttt
gctgtgtggcaaataacagacgaggacttccagcccctcctcggtgttaaccttgacccc
agtaagaaatccttgacctatttcaaccacgactacaaggctgacttgcaggaagtctcc
tttgaccaacaggaagtgaagaagatattctatgggagctttcataaggtgcatgtggca
gtgagccgctttaagatcaaactctatctggactgtaagaaaatagcagagaaacccatc
aacactgttggcagcatatctacggccggcttcatcatgctgggaaaagtgacaaggacc
agagggcccaggagtgggtcagcatcgttccagctgcagtctttgcagattgtgtgcaac
agcttaggggcagaggaggacagatgctgtgatcttcctgcactgagagatgaggagacc
tgcccgaccttagctcctgcctgctcttgcacttctggccacccaggcttgccaggacct
ccagggccccctggcagccctgggaggagaggaccgcaaggggagcagggggagccaggg
cccaagggtgaaccaggcccacccggaaaagtggggccagcaggccccagtggccagcaa
ggctctccaggctcccagggaatcacgattcagggtcctgtgggaccaccaggtataaaa
ggagagaaaggagacactggaagtcctggcgtgcagggcattcctggcgtgcagggagct
ccaggcagggatggtcttcaaggtgcaaagggggtgaggggactagaaggcactgctggg
cctccaggacctcctggaccaaggggtttccaaggagtgacaggctcccgaggcagcagt
ggtgagaagggacctccgggtgacgttggaccaacaggactgccgggtccaaaaggagaa
agaggagagaaaggcgaaccacagtccttggccacaatttaccagctcgtcacccaggct
tgtgagcggatgattcagactcatgtgttgaagtttgactcattcattcatgaacatgca
aggaaaccagttcctgtttgggaagaaagattaaagccaggagaaccaggaccaccaggt
cctccaggtccccctgggagcaatggagaaagaggagaaaatggcatccctggccagcca
gggaaagatgggtatcctggagaacgaggtgccccaggacctaagggagaaaaagggatg
cctggagtcaatgaggaagggattcaaggacccagaggtagaacaggcccaccaggagaa
gtcgtgttgggaaaaccaggtccaaagggttaccctgggaacacgggtcctcaaggtttt
cctggtgtcaggggacagcctggccagtcgggatatccaggtggttgtgatatctctgga
tgttacggagcagatagaagagatttcatcccctga
DBGET
integrated database retrieval system
