KEGG   Aythya fuligula (tufted duck): 116495991
Entry
116495991         CDS       T07966                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
aful  Aythya fuligula (tufted duck)
Pathway
aful03030  DNA replication
aful03410  Base excision repair
aful03420  Nucleotide excision repair
aful03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aful00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116495991
   03410 Base excision repair
    116495991
   03420 Nucleotide excision repair
    116495991
   03430 Mismatch repair
    116495991
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aful03032]
    116495991
   03036 Chromosome and associated proteins [BR:aful03036]
    116495991
   03400 DNA repair and recombination proteins [BR:aful03400]
    116495991
DNA replication proteins [BR:aful03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    116495991
  DNA Replication Termination Factors
   ELG1-RFC complex
    116495991
Chromosome and associated proteins [BR:aful03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    116495991
DNA repair and recombination proteins [BR:aful03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     116495991
  Check point factors
   HRAD17(Rad24)-RFC complex
    116495991
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_24 AAA_16 AAA_22 AAA_11 AAA_assoc_2 AAA_14 DEAD RuvB_N DUF815 AAA_5 ResIII AAA_30 DNAX_ATPase_lid AAA_19 TIP49 PhoH AAA_7 ATPase_2 TniB nSTAND3 AAA_25 Mg_chelatase Thioredoxin_6 Gp44_lid AAA_3 bpMoxR UBA_Rad5
Other DBs
NCBI-GeneID: 116495991
NCBI-ProteinID: XP_032054671
UniProt: A0A6J3DTF5
LinkDB
Position
17:complement(5643854..5646695)
AA seq 329 aa
MAAAGGRNLPWVEKYRPRELSELVSHRDILSTIQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYRDREFSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVSEDGMKALVTLSSGDMRRALNILQSTAMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRKITELKTLKGLALQDILTEIHLFVHRVDFPPSVRIQLLIKMADIEYR
LAAGTSEKVQLSSLVAAFQVTRDLIVAEA
NT seq 990 nt   +upstreamnt  +downstreamnt
atggcggcggcgggcgggaggaacctgccctgggtggagaagtaccggccgagggagctc
tccgagctggtgtcgcaccgggacatcctcagcaccatccagcggttcatcagcgaggac
cggctgccccacctcctcctctatggcccccccggcaccggcaagacctccaccatcctg
gcgtgtgcccggcagctctaccgggatcgagagttcagctccatggtgctggagctgaac
gcctcggatgaccggggaatcgacatcgtcagggggcccatcctgagcttcgccagcacc
aggaccatcttcaagaaaggcttcaagctcgtcatcctggacgaagccgatgccatgacc
caggacgctcagaacgccctgaggcgagtgatcgagaagttcaccgaaaacacccgcttc
tgcctcatctgcaactacctctccaagatcatccccgcgctgcagtcccgctgcacccga
ttccgcttcgggcccctcaccccggagctgatggtgccccggctgcagcacgtcatacag
gaggagggggtggatgtgagcgaggacgggatgaaggcgctggtgaccctctcgagcggc
gacatgcgccgagccctgaacatcctgcagagcaccgccatggccttcgggaaggtgacg
gaggagaacgtctacacctgcacggggcatcccctcaagtccgacatcgccaacatcctc
gactggatgctcaaccaggacttctccaccgcctatcgcaaaatcaccgagctgaagacg
ctgaagggcttggccctgcaggacatcctgaccgagatccacctgtttgtgcacagagtc
gatttcccaccctcggtccgcatccagctgctgatcaagatggcagacatcgagtaccgg
ctggctgcaggcacgagcgagaaggttcagctgagctccctcgtcgcggctttccaagtc
accagggacctgatcgtggccgaagcctga

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