Aythya fuligula (tufted duck): 116496078
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Entry
116496078 CDS
T07966
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03082
ATP-dependent chromatin remodeling
aful03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116496078 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116496078 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
aful01009
]
116496078 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aful03021
]
116496078 (SMARCB1)
03036 Chromosome and associated proteins [BR:
aful03036
]
116496078 (SMARCB1)
Protein phosphatases and associated proteins [BR:
aful01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116496078 (SMARCB1)
Transcription machinery [BR:
aful03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116496078 (SMARCB1)
SWI/SNF complex
116496078 (SMARCB1)
Chromosome and associated proteins [BR:
aful03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116496078 (SMARCB1)
PBAF complex
116496078 (SMARCB1)
SWI/SNF complex
116496078 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
116496078
NCBI-ProteinID:
XP_032054850
UniProt:
A0A6J3DY53
LinkDB
All DBs
Position
17:complement(9442110..9453915)
Genome browser
AA seq
386 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHENQRSHSPRRYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTY
LREQKAKRNNQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHEN
ASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIAS
AIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCS
ELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDA
EMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaaaacgttcgggcagaagcccgtcaagttccagctggag
gaggacggcgagttctacatgatcggctccgaggtggggaattacctgcgtatgtttcgg
ggttccctgtacaagagatacccctcactctggagacgactagccactgtggaagaaagg
aagaagatagtggcatcttcacatgaaaatcagcggtctcacagtcccaggagatatcac
ggctatacgacattagccactagtgtgacgctgttaaaggcctctgaagtggaagagatc
ttggatggaaatgatgagaagtacaaggcagtgtctatcagcacagaacctcccacctac
ctcagagaacagaaggcaaagaggaacaaccagtgggtgccgactttgcccaacagctct
catcacctggatgcggtgccgtgctcaacaacgattaacagaaatcgcatgggcagggat
aagaagaggactttccctctgtgctttgatgaccatgacccagcagtcatccatgagaat
gcatcccagccggaggttctggttccaatcaggctcgatatggaaattgatgggcagaaa
ctcagagatgcgtttacatggaacatgaatgaaaagctaatgaccccagaaatgttctct
gagattctttgtgatgacctggatttgaatcctctgacgtttgtccctgctattgcctct
gccatccggcaacagatcgagtcgtacccaacggacagtattctagaagatcagtcagac
caacgagttattattaagctgaacatccatgtagggaacatctcccttgtagaccagttc
gaatgggacatgtcagagaaggagaattcaccagagaagtttgccttgaagctgtgctca
gagcttggcctgggtggggagtttgtcactaccattgcctacagcatccgaggacagctg
agttggcatcagaagacatacgccttcagcgagaaccctttgccgaccgtggaaatcgcc
attcgcaacacgggggacgctgaccagtggtgccctcttctggaaaccctcacggatgct
gagatggagaagaagatcagagaccaggacagaaatacaaggcgcatgagacgtttggcc
aatactgctccagcctggtaa
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