Aythya fuligula (tufted duck): 116497028
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Entry
116497028 CDS
T07966
Name
(RefSeq) collagen alpha-1(XXVII) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116497028
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aful00536
]
116497028
Glycosaminoglycan binding proteins [BR:
aful00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116497028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
GH131_N
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
116497028
NCBI-ProteinID:
XP_032056414
UniProt:
A0A6J3E048
LinkDB
All DBs
Position
19:complement(6578868..6729118)
Genome browser
AA seq
1745 aa
AA seq
DB search
MEPESEPVSRLRATAAGRGGFCFVWTVLCFSWFLGFTQGNSEDVDVLQKLGLAGRRTSSG
WSSSRAVPQGVIPFKSGVIFTQRARVEAPISTILPAGSSVDLLLVLSLCSHRINNAFLFA
VKSKKKKLQLGVQFVPGKVIVYVGHKRSVYFDYNVHDGQWHNMAIDIRGQTVTLFTSCGK
RRVHADLHFKKDEALDPHGSFLFGKINQHSVQFEGAICQFDIYPSAKAAHHYCKYLKKQC
RQADTYRPNLPPLIPILPRDPSASPSTPQRMEPSLQGLKNLTTATPWLEFGRVTAPLKPR
GSGATTAALVLAPLPRLTTKATKVTVAPSPVPSSTETQPPTRSQPRGTATTLRVSRPTPS
TRMEKTPLPTAKKAPPASQNPATAGRKESKQETKKKMNQKPTIESSEVPSTVKPARRKID
NTTSSVHFVTLKQTPQTPSNGLLPKKHASPPTRKVDPSSVPLVYTKSPLGSARPVSRARA
QAFNLTTPAATDGYQIFDPLGPTPFPFLVGFPGVKGERGPQGPPGLPGLPGPPGKRGSRG
PPGPHGNPGLPGPPGLKGQKGDPGLSPGKARSGQKGDVGLPGLTGFPGPPGRKGYKGYPG
PPGHPGDQGERGPDGSPGAKGYPGRQGLPGPIGEAGPKGSRGYIGLPGLFGLPGADGERG
IPGVPGKRGKMGRPGFPGDFGERGPPGIDGNPGELGAPGPPGVLGLIGDMGSVGPIGYPG
PKGLKGLMGNPGEHGLKGDKGDQGGAGVPGDVGFQGDKGSQGLPGVPGARGKPGPLGKVG
DKGPVGFPGPPGPEGFPGDIGPPGENGPEGLKGKPGARGLPGPRGLPGQEGDEGPLGPPG
VPGPEGRPGRKGFPGRPGPDGPKGEPGNHGRPGKVGEQGLMGFIGPVGEPGIVGEKGDRG
SVGPPGPPGVKGSMGHPGIPGAVGFPGIPGPAGPAGVRGAPGTRGMKGRRGARGPDGPVG
EPGSRGAKGRPGEPGKLGPEGLQGKMGETGETGSRGFPGIQGPSGPPGAKGAPGDPGPQG
PQGPPGPLGEIGHKGPPGSMGQPGLAGEPGMKGDPGQLGAPGEQGLIGQRGEPGLEGDSG
PPGPDGIKGDKGEQGLEGEKGEKGTEGLKGKEGPPGYPGITGVRGPEGKPGKQGEKGKPG
QKGSKGYQGQLGETGAPGKEGPKGNQGPKGSRGTLGPMGAPGRMGAQGEPGLKGYQGHAG
PPGPIGPPGPKGEKGEQGDDGKVEGPQGPPGDRGPVGDRGDRGEPGDPGYPGQEGLDGER
GKPGQQGLPGDPGPPGQPGAKGSKGDVGQKGKQGARGSAGSRGSPGTLGLPGPRGVVGRQ
GQEGAPGVDGVPGKDGVPGVLGEQGDDGEEGVTGMSGKRGNPGIPGLPGAQGPPGFKGER
GLPGQTGQTGKRGSPGGMGLPGSPGNAGPKGQPGDFGEAGFPGIAGIFGPKGPPGDLGFK
GIQGPRGPPGLMGKEGIIGPHGILGPTGSPGPKGDKGSRGEMGLPGPRGPPGPRGHPGPP
GPPGIPASFQQDGFGAAFRTLIDSSTALKTESYQHPDLLMLDHGGEIFKTLHYLSNLIQS
IKRPLGTKENPARICRDLMNCEQKMNDGTYWIDPNLGCSSDTIQVICNFTNGGQTCLSPI
TVSKLDFDVGRVQMNFLRLLSSEVVQHITIHCLNTSVWREGSSKKPSDKAVRFKAWNGQM
FEAEGQLKPEVAADDCKIKDGRWHRTLFSFRTQDPQQLPIVNIYNLPPSEPGKQYHLEVG
PVCFL
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaatcagagccggtctccagactcagagctacagcagcaggcaggggggga
ttctgctttgtctggactgtgttatgttttagctggttcctgggattcacacagggaaat
tctgaagatgtggatgttcttcagaagctgggcctggcagggagaaggacgtcaagcgga
tggtcctcgtcacgtgcagttcctcaaggggtcattcctttcaaatcaggggtcatcttc
actcagcgagcgcgtgtcgaagcaccgatcagcaccatcctgcccgcaggctccagcgtt
gacttgctcctagtgctgagcctgtgctcccaccgcatcaacaatgcttttctctttgct
gtcaagagcaaaaagaaaaaactgcagctgggggtccagtttgtgcctgggaaggtcata
gtatacgtaggccacaagcgctctgtatattttgattacaatgttcacgatggccagtgg
cacaatatggccatcgatatccgtggccagacagtcactttatttacttcttgtgggaag
cgcagagtacatgcggatttgcattttaaaaaggacgaggcgttggatccacatgggtct
ttcctctttgggaagattaaccagcactccgtgcagtttgaaggagccatctgccagttt
gatatttatccttccgccaaggcagctcatcattactgtaaatacctgaaaaaacagtgc
aggcaagcagatacctaccggccgaacctgccccccctcatccccatcctgcccagggat
cccagcgcctccccgagtaccccacagcgtatggagccctcgcttcagggtctgaagaac
ttgaccactgccaccccatggctggagttcggcagggtcacggcacccctcaagcctcga
ggttcaggtgcaacaaccgccgcgttggtcttggcccctctgccgagactgaccaccaaa
gccacgaaggtcacagtggccccgtctcctgtcccatcgagtaccgagacgcagccaccc
actcgttcgcagcctcgggggacggcgaccaccctcagggtgtcccggcccactcccagc
acgcggatggagaaaactccccttcccactgccaaaaaggccccgccagcaagccagaac
cctgccacggccggcaggaaggagtccaagcaagagaccaaaaagaagatgaaccaaaaa
ccgaccatcgagtcctcggaagtgcccagtactgtaaagcccgcgaggaggaagattgat
aacacaaccagcagcgtccactttgtcaccctaaagcaaaccccgcagaccccaagcaat
gggctccttccaaagaagcatgcgtcgccccccaccaggaaggtggatcccagcagtgtc
cctctggtgtacaccaaatcgcccctggggtctgcccgtcccgtctccagagcccgggca
caggccttcaacctcaccaccccagctgcgaccgatggctatcaaatctttgaccccctt
ggacccactccatttccatttttagtgggatttccaggagtgaaaggagagaggggaccc
cagggtcccccaggtctgccgggcttaccaggaccacctggcaagagaggttcccggggt
cccccgggtccccacggaaaccctggcttacctggccccccaggcctgaaaggtcagaaa
ggagatcctgggctgtcacctggaaaagctcgcagtggacagaagggagatgtgggctta
cctggtttgactgggttccctggaccacctggtagaaagggatataaaggctaccctgga
ccaccaggtcaccctggagaccagggtgaacgaggaccagacggaagccctggtgccaaa
ggttatcctggcaggcagggcttacctggccccataggggaagctggtccaaaaggcagt
cggggatatattggtctcccgggattatttgggctaccaggggctgatggagaacgaggg
atccctggagttcctgggaagaggggcaagatgggtaggccgggttttcctggtgatttt
ggggagcgaggacctccaggcatcgatgggaacccaggagaattgggagccccaggtcct
cctggagtccttggactcattggtgacatgggctctgttggacctataggctatccagga
ccaaaaggcttaaaggggctgatgggaaaccctggagaacatggactgaaaggtgataag
ggtgatcagggaggagcaggtgtgccaggagatgttggcttccaaggagacaagggtagc
caaggtttgcctggggtccctggggcacgagggaagccaggccccctgggaaaagttggt
gacaaaggtccagtcgggtttccaggaccacctggccctgagggctttccaggggacatc
ggcccgccaggagaaaatggccctgaaggcctaaaggggaagccgggagcacgaggttta
cctgggccaagaggactgcctggacaagagggagatgaaggacccttaggaccaccagga
gtccctggtccagagggtcgacctggccggaagggatttccgggaagacctggtcctgat
ggtccaaagggcgagccaggaaaccacggccgaccagggaaagttggtgagcagggtcta
atgggcttcattggtccggtaggggagcctggaatagtgggagaaaagggtgaccgtggc
tcagtgggacccccgggccctccaggagtcaaggggtcgatggggcaccccgggatacca
ggagcagtgggttttcctggaatccccggaccagcaggtccagcaggagtccgcggtgca
ccagggaccagagggatgaagggccgcaggggcgccagagggcctgatggaccagtaggc
gagccggggtcgcgaggtgccaagggccgtcccggggagccaggcaagctggggccagaa
gggctgcaggggaagatgggcgagactggggagacaggatcgcgtggcttcccaggtatc
caagggccttcaggacctccaggagcaaaaggggcaccaggcgacccgggtccacaagga
ccacaggggccacctgggcctttgggagaaatcgggcataagggaccgcctggctcaatg
ggacaacctggccttgcaggtgaacctggcatgaagggtgatcctggccagctgggagct
cctggagagcaaggcctcatcggtcaaagaggagaaccagggctggaaggggacagcgga
ccacccgggccagatggaatcaagggagacaaaggagagcaaggcctggaaggagagaaa
ggagaaaagggcactgaaggactgaagggaaaagaagggcctcctggatatcccggcatc
acaggtgtccgaggaccagaagggaaaccaggaaaacagggggaaaaaggcaagcctggc
cagaagggcagcaagggctaccaggggcagctcggcgagacaggagctccagggaaggag
gggccgaaggggaaccaaggccctaaaggatcccgaggtaccctgggacctatgggtgct
ccgggaagaatgggtgctcagggggagcccggcttgaagggttaccagggacacgcagga
ccaccagggccaattggaccaccggggccaaagggggagaagggagaacaaggtgatgac
gggaaggtggaaggcccgcagggaccacccggagacagaggccccgttggtgacagagga
gatcgaggggaacctggagaccctggttatcctggtcaagaagggcttgatggagaaaga
ggaaaacctggacagcaaggcttacctggggatcctggaccaccaggccagccaggagca
aagggatccaaaggtgatgtgggtcaaaaaggaaagcaaggagcaaggggcagtgccggg
agcagaggctcaccgggcacccttgggctaccaggtcctcgaggagtggtgggaaggcag
ggtcaagagggtgcccctggtgtggacggagtgcctggaaaggatggcgtgcctggggtg
ctgggagagcagggagatgatggggaagaaggtgtaacagggatgtcaggcaaaagaggg
aaccctggcataccaggactgcccggggcacagggaccaccagggttcaagggtgaaaga
ggattgcctggacagactggccaaacagggaagcgaggatcaccaggaggaatgggcctt
ccagggagccctggcaatgcaggccccaaaggccagccgggagactttggtgaggcagga
tttccagggatcgcgggcatctttgggccaaaggggcccccaggagaccttggtttcaaa
ggcattcagggaccacgtgggccacccggcctcatgggaaaagaaggaattattggtccg
catggcattctgggtcccacgggaagccccgggccaaagggagacaaaggcagccgcggg
gaaatgggtcttccaggtccaaggggtcctccaggcccacgaggacaccctggccctccg
ggacctccaggaattccagcttcatttcaacaagatggctttggggctgctttccggaca
ctgatcgactccagcactgcactcaagacagagagttaccagcatccagaccttctcatg
ctagaccacggaggggagatctttaagactctacactacctcagcaacctcattcagagc
atcaagagacccctgggcaccaaggaaaaccctgcacgcatctgtcgagacctcatgaac
tgtgaacagaagatgaacgatggtacctactggatcgacccaaatctcggctgttcctca
gacaccatacaggtcatctgcaacttcaccaacggtgggcagacatgcctcagccccatc
actgtctccaagctggattttgacgtcggcagagtccagatgaacttccttcgcctgctg
agctcagaggtggtgcagcacatcaccatccactgcctgaacacctccgtctggcgggaa
ggctcatccaagaaaccttcagacaaagctgtgcgcttcaaggcctggaacgggcagatg
tttgaggcagaaggtcagctcaagccagaagtggcagctgatgattgcaagatcaaggac
ggacgctggcatcggactctcttttcgtttcggacgcaggaccctcagcagctgccaatt
gtcaacatctacaaccttcccccatccgagccaggaaagcaataccacctcgaggtcggc
cccgtgtgcttcctttga
DBGET
integrated database retrieval system
