Aythya fuligula (tufted duck): 116497156
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Entry
116497156 CDS
T07966
Symbol
LIG3
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116497156 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aful03400
]
116497156 (LIG3)
Enzymes [BR:
aful01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116497156 (LIG3)
DNA repair and recombination proteins [BR:
aful03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
116497156 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
Synaptonemal_3
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
116497156
NCBI-ProteinID:
XP_032056619
UniProt:
A0A6J3E0N0
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Position
20:complement(5367249..5382267)
Genome browser
AA seq
903 aa
AA seq
DB search
MAEQRYCVDYAKRGTAGCKKCKEKLVKGTVRIGKIVPNPFTESGGEMKEWYHVRCMFEKL
EKARATTKKIEDITDLEGWEELQDEEKELIQKHIAEATSKAATTPKKKATVQAKLTPTGQ
ITSPSKDPLAAVNPKKFSGFTAKPKNSEDVPANSSHKSSLSAKKSDPKHKDCLLREFRKL
CAMVADKPSYNVKTQIIQDFLRKGTGGDGFHGDVYLTIKLLLPGVIKIVYNLNDKQIVKL
FSRIFNCSQEEMIRDLEQGDVSETIRLFFEQSKSCPPAAKSLLTIQEVDEFLIQLSKLTK
EDDQQSVLHNITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQD
VVERVLKNQQEAEKMPGLKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKY
DGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGGQSMILDSEVLLIDNKTG
KPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLRERRKFLHDNMVEIPXPDP
LLRDEACYKSFGSGRYDHRVIREGLEGLVLKDIKGNYEPGKRHWLKVKKDYLNEGAMADT
ADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCAGGHDDATLARLQTELDMVK
ISKDPSKIPSWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRCTR
IRDDKDWKTATNLPQLKELYQLSKEKADFSVVAGEEEESTAGSSGENEGNSRSSTPHKTT
KTPPSKSPAKAKKPEGTKAITESPQKPEEKRGEKRKASEMDDNGKKTLLDIFTGVKLYLS
PSVKDFNKIRRYFIAYDGDLVPEFDTASATHVIGDIDENPGAKRVSPKWIWECIRKRRLV
APC
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcagcggtactgcgtggactacgccaagcgaggcacggccggctgcaagaag
tgcaaggagaagctggtgaagggcacggtgcgcatcgggaagatcgtgcccaaccccttc
accgagtccggcggggagatgaaggagtggtaccacgtcaggtgcatgttcgagaagctg
gagaaggcccgtgccaccaccaagaagatcgaggacatcacggacctggagggctgggag
gagctgcaggacgaggagaaggagctgatccagaagcacatcgcagaagctacttctaag
gctgcaactacaccgaagaaaaaagcaacagtccaagctaagctcactcccacaggacaa
ataaccagtccctcaaaggatccattagctgctgtcaatccgaagaagttctctggcttc
acagccaagccaaagaattcagaagatgtccccgcaaactcttcccacaagtctagcctg
tctgcaaaaaaaagtgatccgaagcacaaggactgcttgctgcgagagttcaggaagctc
tgcgccatggttgctgacaagcctagctacaatgtgaaaacacagatcatccaggacttc
ctgcggaagggaactggaggagatggttttcatggtgatgtgtacctgaccattaagctg
ctgttaccaggcgtcattaaaattgtttacaacttgaacgataagcagattgtaaagctg
tttagtaggatttttaactgcagccaagaggaaatgatccgggacctggagcagggagat
gtctccgagaccatacgcctcttctttgaacagagcaagtcttgtcctccagcagctaaa
agtctcctgactatccaagaggtagatgagttcctaatccagctatcaaagcttactaag
gaagatgaccagcaaagtgtgctgcacaatatcactcgcagatgtactggcaacgacctg
aaatgcatcatcaggctaattaagcatgacctgaaaatgaatgctggtgcaaagcacgtg
ttggatgctttggatccaaatgcttatgaggcattcaaagcatcacgcaacctccaggat
gtggtagagcgagtcctgaagaaccagcaggaggctgagaagatgccaggcctgaagcga
accctcagtgtgcaggcctccctgatgaccccagtgcagcccatgctggctgaagcctgc
aagtcaattgagtacgccatgaagaagtgcccaaatggcatgtatgcggagatcaaatac
gatggtgagcgagtgcaggtccataaaaatggagatcacttcagctacttcagccggagc
ctcaaacctgtccttcctcacaaagtagcacattttaaggacttcatcccccaggctttc
cctggcgggcaaagtatgatcctggattcggaagttcttctaattgataacaaaactggc
aagccacttccttttgggactcttggtgtgcataagaaagctgctttccaagacgccaat
gtttgcttgtttgtatttgactgcatctatttcaatgacatcagcctgatggacaggcct
ctgcgcgagcgtcgcaagtttctacatgataacatggttgaaatccccnaaccggatcct
cttctcagagatgaagcatgttacaaaagcttcggatctggcagatatgatcaccgagtc
atccgtgaaggactggaaggactggtgttgaaagatataaagggtaattatgaaccagga
aaacggcactggctgaaagtgaaaaaggactatctaaacgagggtgcaatggctgacaca
gcagacttggtggtgctgggagctttctatgggcaaggcagtaaaggtgggatgatgtcc
attttcctcatgggctgctatgatcccaagagtgagaagtggtgtactgtgaccaagtgt
gctggtggccatgacgatgccaccttggcccgtctgcaaacagagctggatatggtgaag
atcagcaaggatcccagtaaaattccaagctggctaaaaattaacaaaatctactatcca
gacttcattgtcccagatccaaagaaagccccagtatgggagatcacaggagctgaattc
tctaaagcagaagcccacactgcagatgggatctccattcgtttccctcgctgcacccgc
attcgagatgacaaggactggaagacagccaccaacctcccacagcttaaggagctgtac
caactctccaaagaaaaggctgacttcagtgttgttgctggggaggaagaagagtccacg
gctggcagcagtggagagaatgagggaaattccaggtcttccacaccacacaagactact
aaaactcccccaagcaagtcacctgcaaaagccaagaagccagaaggcactaaagcaatc
actgaatcccctcaaaagccagaggagaaacgaggagagaagcgaaaagcatctgagatg
gatgacaatggaaagaagacactgctggacatattcactggtgtgaagctgtacctatcg
ccctcggtgaaggatttcaacaaaatccgtcgctacttcatagcctacgatggtgatctt
gtgccagagtttgacacagcctcagcaacgcatgttataggggacattgatgagaatcct
ggtgctaagcgtgtatctcccaaatggatctgggaatgcatccgcaaacggagactggta
gccccatgctag
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