Aythya fuligula (tufted duck): 116497444
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Entry
116497444 CDS
T07966
Symbol
NUP88
Name
(RefSeq) nuclear pore complex protein Nup88
KO
K14318
nuclear pore complex protein Nup88
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116497444 (NUP88)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aful03019
]
116497444 (NUP88)
Messenger RNA biogenesis [BR:
aful03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116497444 (NUP88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
STX6_10_61_N
Sec10_HB
Motif
Other DBs
NCBI-GeneID:
116497444
NCBI-ProteinID:
XP_032057078
UniProt:
A0A6J3E6I7
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All DBs
Position
20:4137394..4147001
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AA seq
732 aa
AA seq
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MAAEWGPAEQWRAALPQHAVLGRLRDRVAAAAAVAAVPSRPGAGPRAALSRNLLLGLDGD
LLLWDGDCSALHAISLRRLGGPEPGLSDYQTLLCINPPLFEVYQTLLSPTQHHVALVGTR
GLTVLELPKRWGKSSEFEGGKETVNCSTIPIAERFFTSSPSLTLKHAAWYPCETLEPHIV
LLTSDNTIRIYSLKIPQTPIKVITLSDSEEETLTINKGRAYTASLGETAVAFDFGPLVPV
PKNVLGQRGSDEVLAYPLYILYENGETFLTYISLIQSTGNLGKLLGPLPMHPAAEDNYGY
DACAVLCLPCVPNILVIATESGMLYHCVVLDAEEDDEQSEKSWDPRSDLIPSLYVFECVE
LELALKLASGDEEEPLESDFSCPIKLHQDPKCPSRYHCTHEAGVHSVGLTWINKLHKFLG
SDEEDKDSLQELGAEQKCFVEHILCTKPLPCRQPAPIRGFWIVSDILGPTMICITNTYEC
ITRPLLSTVHPASPPLLCTREDKDVTVSPLRILADSQHSFEKHIRSILQRSTANPLLLKS
GDKDAAPPPEECLQLLSRATQVFREEYILKQDLAKEEIQQRVKLLLGQKKKQLEDLNYCR
EEKKSLREMAERLADKYEEAKEKQEDIMNRMKKVLRSFHSQLPVLSDSEKDMKKELQTIH
DQLQHLSNAIRQVKMKKEYQQKKMEKGTSPRKPSITLSAYQSKCIQTVLKEEGEHIREMV
KQINDIRSHVNF
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgagtggggcccggcggagcagtggcgcgcggccctgccgcagcacgccgtg
ctcggacgcctccgcgaccgcgtggccgccgccgccgccgtcgccgccgtcccctcacgg
cccggggccggtcccagggcggcgctgagccgcaacctgctgctggggctggacggggac
ctgctgctgtgggacggggactgcagcgccctgcacgccatcagcctccgccgcctcggc
ggccccgagccggggctgagcgattatcagacgctgctgtgcataaacccgccgctgttc
gaggtgtaccagacgctgctgagccccacgcagcaccatgtggcgcttgttggcaccagg
ggactcacggtcctggagctgcccaaacgctggggcaagagctccgaattcgagggtggg
aaggagacggtgaactgcagcaccattcccatcgccgaaaggttcttcacaagctcgccg
tctctgactctgaagcacgccgcgtggtatccctgcgagacgctggagccccacatcgtg
ctcttgacttcagataacacgataaggatttacagcctgaagatacctcagacgcccatc
aaagtgattactctttcagattcagaggaggagactcttacaatcaacaaagggagagcc
tacacagcgtcactgggagagactgcggtggcgtttgactttggcccgctggtgccagtc
ccaaagaacgtacttggacagcgagggagcgacgaggtgctggcttacccactgtacatc
ttgtatgaaaatggggagacattcctcacgtacatcagcctgatacagagcactgggaat
cttggcaagctgctcggccctttgcccatgcatcctgctgcagaagataattacggctac
gatgcctgtgctgtcctttgcctgccttgtgttccaaacatcctggtgattgctactgaa
tcaggaatgctttatcactgtgtggtactggatgcagaagaggatgacgagcagtcggaa
aagtcatgggacccaagatctgatcttattccttccctgtacgtgtttgaatgtgttgaa
ctggaacttgcactgaaactggcatcaggagatgaggaagagcctttggagtctgatttc
tcttgcccaatcaaactgcatcaagatccaaaatgtccctctagataccactgcacacat
gaagctggtgtccacagcgtggggttgacgtggatcaacaaactgcacaaattccttggt
tcagatgaagaagataaagacagtttacaggagctgggtgcagaacagaagtgctttgtt
gaacatattctttgtacgaaaccattgccatgcaggcaacctgctccaatcagaggattt
tggatagtctctgacatcctggggcctacgatgatctgcatcacaaatacctacgagtgt
attacaaggccgctcttaagcacagtccatcctgcatcccctcctttactatgtaccagg
gaagacaaagatgtaaccgtttcccctctccggatcctggctgactcacagcattcattt
gagaagcacatccgaagcatccttcagcggagtactgccaatcccttgctcctgaaatct
ggggataaagatgctgctcctccccctgaagaatgccttcaacttcttagcagagccaca
caagtgttcagagaagaatatatactgaaacaagatttggcaaaagaggaaattcagcaa
agagtgaagctgctgttgggacagaaaaagaagcaactagaagatcttaattactgtcga
gaagaaaagaaaagtttgcgggaaatggctgaacggttggctgacaagtatgaggaagcc
aaagagaagcaagaagatattatgaataggatgaagaaagtacttcgtagcttccactct
cagcttcctgttctatcagacagtgaaaaagatatgaagaaggaactgcagacaatacat
gaccagctgcagcacttgagcaatgcaatcagacaggttaaaatgaagaaggaataccag
cagaaaaagatggaaaaaggtactagcccacgaaaacccagcatcaccctcagtgcctac
cagagcaagtgcatccaaaccgttctgaaagaagagggagaacacataagggaaatggta
aaacagattaatgacatcagaagccacgtgaacttctaa
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