Aythya fuligula (tufted duck): 116497688
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Entry
116497688 CDS
T07966
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aful
Aythya fuligula (tufted duck)
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aful03016
]
116497688 (RTCB)
Enzymes [BR:
aful01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
116497688 (RTCB)
Transfer RNA biogenesis [BR:
aful03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116497688 (RTCB)
Prokaryotic type
tRNA splicing ligases
116497688 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
116497688
NCBI-ProteinID:
XP_032057483
UniProt:
A0A6J3E7U2
LinkDB
All DBs
Position
1:56780147..56791234
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKLDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
VEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgacgagctgcagttcctggacaagctggacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcatgtggagggtgttttctacgtgaacgac
cctctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggggggggtgcggga
gggtttttgcccgctatgaagcagatcgggaatgtggcagcgctgccgggcatcgttcat
agatcgatcggcctgccagatgtccattcgggctacgggtttgccattggcaacatggct
gcctttgacatgaatgatcctgaagcagtggtttcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcttactgcgtacaaatttggatgaaagtgatgtgcagcctgtgaag
gagcagctcgcccaagcgatgtttgaccatattcctgttggtgtcggctccaagggtgtc
atccccatgaatgccaaggatttggaagaggcgctagagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaagaatgctg
caggccgatcccaacaaggtctcctccagagcgaagaaaaggggcctgcctcagctgggg
accctgggagcaggaaatcattacgccgagatccaggtggtggacgacatttacaacgaa
tacgctgcccggaagatgggcatcgaccacaaagggcaggtgtgcgtcatgatccacagc
ggcagcaggggtttgggccaccaagttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaacgatcggcaactagcatgcgccaggattgcctct
gtagaaggacaggattacttgaagggaatggcagcagctggaaattatgcgtgggtcaac
cgctcttctatgacttttctaacgaggcaggcctttgccaaagtcttcaacaccacccca
gatgacctcgatatgcacgttatctatgatgtgtctcacaacattgccaaagtggagcaa
cacgtggtggatgggaaggagcggactctgctggtgcacagaaaagggtcaaccagagcc
ttccctcctcaccatcctcttattgctgttgattatcaactgaccggacagcctgttttg
atcggtgggactatgggcacctgtagctacgttcttactggcacggagcaaggcatgact
gagaccttcggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgacagat
gtggttaatacctgccatgaggctggcatcagcaagaaagccataaaattgagacctatt
gctgttataaaaggctag
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