Aythya fuligula (tufted duck): 116498001
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Entry
116498001 CDS
T07966
Symbol
SRRM1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03013
Nucleocytoplasmic transport
aful03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116498001 (SRRM1)
03015 mRNA surveillance pathway
116498001 (SRRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aful03019
]
116498001 (SRRM1)
03041 Spliceosome [BR:
aful03041
]
116498001 (SRRM1)
Messenger RNA biogenesis [BR:
aful03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116498001 (SRRM1)
Spliceosome [BR:
aful03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
116498001 (SRRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
BAF1_ABF1
Motif
Other DBs
NCBI-GeneID:
116498001
NCBI-ProteinID:
XP_032058014
UniProt:
A0A6J3E4G1
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All DBs
Position
23:7122767..7140598
Genome browser
AA seq
906 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
TAFLELKKEEIKQRQIEQEKLASMKKQDEDKEKRDKEDKDNREKRDRSRSPRRRKSRSPS
PRRRSSPVRRERKRSHSRSPHHRTKSRSATPAAEKKEATPEPEPSVKPKETVVQEATSNS
DIPKAPKSEPPVPETKETSPERNSKKEREKEKEKTRQRSPTRSKSRSRSRSRSPSHSRPR
RRHRSRSRSYSPRRRPSPRRRPSPRRRSPPRRLPPPPRHRRSRSPVRRRRRSSASLSGSS
SSSSSSRSRSPPKKPPKRTVSSPPRKTRRMSPSASPPRRRHRPSPPASPPPKPRRSPTPQ
QSNRSRKSRGSVSPGRASAPKHKSTEKRESPSPAPKPRKADLSESEEDKGGKMAAADSVQ
QRRQYRRQNQQSSSDSGSSSSSEEERPKRSNVKNGEVGRRRRHSHSRSPSPSPRKRQKES
SPRMQMEKRWQSPVMKSRRRRSPSPPPARRRRSPSPAPPPRRRRSPSLPRRRSPSPPPRR
RSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPKRRASPSPQSKRRVSHSPPPKQRSSPAA
KRRSPSISSKHRKGSPPSRSNREARSPPQNKRHSPSPRPRASHTSASPPPLRRGASASPQ
RRQSPSPSTRPIRRVSRTPEPKKTKASTPSPRSARRVSSSRSASGSPEPAPKKHQGPPSP
ARSRSPSGNWSPAKKAKSPTQSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKK
EKAAAATAAAAVAAADTTSAQEEQEAETEPKKETESEPEDNLDDLEKHLREKALRSMRKA
QVSPPS
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggcttcttccgcggaacaagtgcagaacaggacaatcgcttcagcaacaaa
cagaagaaactgttgaagcaattgaaatttgcagaatgcttagaaaagaaggtggacatg
agcaaagtaaatctggaagtaatcaaaccatggataacaaaacgagtaacagaaatcctt
ggatttgaagatgatgtagtaattgaatttatattcaaccagttggaagtgaagaatcca
gattccaaaatgatgcaaatcaacctgactggttttttgaatgggaaaaatgctagggag
ttcatgggagaactgtggcctctgctgttaagtgcacaggaaaacattgctggtattcca
actgcatttctggaattgaagaaagaagaaattaaacagcgacagatagagcaagagaaa
ctggcttctatgaagaaacaagatgaagacaaggagaagagggacaaggaagacaaagac
aacagagaaaagagagacagatccaggagtccaagaagacgcaagtcaaggtctccttcc
cctagaaggaggtcatcacctgtcagaagagagcggaaacgcagccattctcgctcccct
catcacagaaccaagagccgtagtgctactcctgcagcagaaaagaaggaggcaactcct
gagccagaaccctctgtgaaaccaaaggagactgttgttcaagaggcaacttcaaacagt
gatatcccaaaagctcctaaatctgaacctcctgtgccagagactaaggaaacttcacca
gaacgtaattcaaagaaagagagagagaaggagaaagagaagactcgtcaaagatcccca
actcggtccaagtcaaggtcaaggtctcgatcccgttctccatctcattcccgaccaaga
aggcgtcatagatcgcggtcaaggtcttactctcctagaaggcgaccaagcccaagacga
cgaccgtccccaaggaggaggagtcctccaaggcgattgcctcctccacccagacacaga
agaagcagatcgcctgtgaggcggagaagacggtcatcagcatctttatctggtagtagc
tcctcttcctcctcgtcacgttcccgatcaccaccaaagaaaccacctaaaagaactgta
tccagtcctcctcgtaaaacgcgtaggatgtctccttctgcaagccctcctaggcggagg
cacagaccatctccaccagcaagtccacctccaaaaccacgtagatctccaacgcctcag
cagtcaaatcgttcaagaaaaagccgtggctctgtttcacctggcagagcatcagcaccc
aaacataagagtactgaaaaaagagaatctccttcaccagcgccaaaaccaaggaaagct
gatctgtctgaatcggaagaagataaaggaggtaaaatggctgcagcagattctgtgcaa
cagaggcgtcaatacagaaggcaaaatcaacaatcttcatctgattctggctcctcatct
tcatctgaagaggaaagacctaaaagatccaatgtgaagaatggagaagttggtagacgc
cgacgccattcgcattcacgcagtccatccccatctccacgaaaacgacagaaggaatcc
tcccctcggatgcagatggaaaagaggtggcaatcgccagtgatgaaaagtaggaggaga
agaagtccatcacccccaccagccaggcgacggcgctctccttcgcctgcccctcctcct
aggcggcgacggtcaccttcattgcctcgccgaaggtctccgtcgccacccccacgtaga
cgctcaccttctccacggagatactctccaccaatacagagacgatactctccttctcca
cctccaaagagaagaacagcttctcctcctccccctaaacgacgagcatcaccgtctcca
cagtcaaaacgcagagtctcccattcaccaccgccaaaacaaaggagctctccagctgct
aaaaggcgttcaccttcgatatcttccaagcacaggaagggttctcctcccagtaggtct
aatcgcgaagcacgttctccaccacaaaacaaaaggcattcaccttcaccaaggcctaga
gcttctcatacatctgcaagcccaccaccgctgcgaaggggagcttcagcttcaccgcag
agaagacagtctccatctccaagcactagacccatcaggagggtgtcaagaacgccagaa
cctaagaagacaaaggcttccacgccaagtccacgatctgcaagacgggtgtcttcatcg
cggtccgcatcaggatcacctgaaccagctccaaaaaaacatcaaggacctccatctcct
gctcgatctcgttccccttctggaaactggtcacctgcaaaaaaggctaaaagtccaact
cagagcccatcacctgcaaggaattcagatcaagaagggggtggaaagaagaagaagaaa
aagaaggataagaagcataaaaaggataagaagcacaagaaacacaaaaaacataagaag
gaaaaggcggcggcagctacagcagctgctgctgtggctgcagcagataccacctcagca
caggaagaacaggaagcagagacagaacctaaaaaggagacagaaagtgaaccagaagac
aacctcgatgacctagagaaacacctgagagagaaagcactgaggtcaatgaggaaggcg
caagtgtcaccaccatcttag
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