Aythya fuligula (tufted duck): 116499025
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Entry
116499025 CDS
T07966
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03013
Nucleocytoplasmic transport
aful03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116499025 (UPF1)
03015 mRNA surveillance pathway
116499025 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aful03019
]
116499025 (UPF1)
Enzymes [BR:
aful01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116499025 (UPF1)
5.6.2.5 RNA 5'-3' helicase
116499025 (UPF1)
Messenger RNA biogenesis [BR:
aful03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116499025 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
116499025 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
116499025
NCBI-ProteinID:
XP_032059484
UniProt:
A0A6J3E8L7
LinkDB
All DBs
Position
26:complement(1568848..1590625)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAAQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcacctttctggacaccgaggag
gccgagctgctcggcgccgacacgcaaggctccgagttcgagtttaccgacttcaccctc
cccagtcagacccagacaccgccagggcccggtcaggcagggccgggacaaggccaaggc
ccccccggagcggcccaaggcccgccaggccccatcgaggcgcaggttaatggacccgat
ggcattctgcagaatggagcagtagatgataacgtagctaaaaccagccagcttctggca
gagctgaactttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcctgtgtggtttactgcaacaccagcaag
aagtggttctgcaatgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcgaagtgcaaagaggtgactctccataaagacggacctctaggagagactgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gattctgtggttgttttgctgtgcaggcagccatgtgcgagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcatgg
ctggtgaagattccatctgagcaggaacagttgagagcacgtcagattacagctcagcag
attaacaaactggaagaactttggaaggaaaatccatctgcaactcttgaggacttagaa
aagcctggtgttgatgaagagccacagcatgtcctactcagatatgaagatgcttatcaa
taccagaatatatttggtcctctagtcaagcttgaggctgactatgacaagaagctcaaa
gagtcgcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgattcagatatgcgtctaatgcagggagatgag
atctgcttgaggtataaaggagacctggcccctttgtggaaaggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcccctgtggaagttactcataacttccaagtggattttgtatggaagtctact
tcatttgacagaatgcagagtgctttgaaaacatttgctgtggatgagacttcagtgtca
gggtacatctatcacaaactgttaggccatgaggtagaagatgtaattattaaatgtcag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtaccggaaaa
acagtgacatcagctacaatcgtctatcatctggctagacagggcaatgggcctgtgtta
gtctgtgctccgagtaatatagctgtagatcagttgactgagaagattcatcaaactgga
ctgaaggtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgtgtccttc
ttggcattgcataaccagatcagaaacatggatagcatgccagagcttcagaaactgcag
cagcttaaagatgaaactggagaactgtcatccgctgatgagaagcgctaccgtgcacta
aaacgaacagcagaacgtgaattacttatgaatgcagatgtgatctgttgcacgtgtgtt
ggagctggtgatccaaggcttgcaaagatgcagttccgctccattctgattgatgaaagc
acccaggctactgagccagagtgcatggtgccagttgtcctgggagcgaaacagcttatc
cttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagctgcgaaggct
ggcctgtctcagtctctctttgagaggctcgtggtgctggggattcgcccgattcgcctg
caagtgcagtaccgcatgcatcctgcacttagtgcttttccatccaatatcttctacgag
ggttcactccagaatggtgttactgcagctgaccgtgtgaaaaaaggatttgatttccag
tggccgcagccagataagccgatgtttttctatgttacgcaaggacaggaagaaattgcc
agctcgggcacctcttacttaaacaggactgaagctgccaatgtagagaagataactaca
aagctattgaaagctggtgccaaaccagatcagattggaattattactccttatgaaggt
caacgatcctatctggtgcagtacatgcagttcagtggttccttacatacaaaactctac
caggaagtagaaattgcgagtgtggatgccttccaaggaagagagaaggactttattatc
ctttcttgtgtgagggccaacgaacaccaaggaataggatttctgaatgaccccaggcgt
cttaatgtggctctaacaagagcaagatatggagtaattattgttgggaacccgaaagca
ctctccaaacaaccactttggaatcacctgctgaattattacaaggagcagaaagttcta
gtggagggaccactgaataacctccgggaaagccttatgcagttcagcaagccccgaaaa
ctcgtcaatactatcaacccaggtgcccgtttcatgactactgccatgtatgatgcacgt
gaagctattattccaggatctgtctatgaccgaagcagtcaagggcgcccatccaacatg
tacttccaaacccacgaccagatcgggatgattagtgccggccccagccacgtcactgct
atgaacattcctatccctttcaacctcgtgatgccaccaatgccaccaccgggatacttt
ggccaggctaacggaccagctgcaggacgtggggcgccaaaaggaaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttccaaatagt
caagcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgcgcatatcaacatggcggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
