KEGG   Aythya fuligula (tufted duck): 116500022
Entry
116500022         CDS       T07966                                 
Symbol
COL2A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
  KO
K19719  collagen type II alpha
Organism
aful  Aythya fuligula (tufted duck)
Pathway
aful04510  Focal adhesion
aful04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:aful00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    116500022 (COL2A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    116500022 (COL2A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:aful00536]
    116500022 (COL2A1)
Glycosaminoglycan binding proteins [BR:aful00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   116500022 (COL2A1)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 116500022
NCBI-ProteinID: XP_032060808
UniProt: A0A6J3EHH6
LinkDB
Position
29:complement(1678093..1698052)
AA seq 1488 aa
MPGRLAAFLLLLLFLLLGLAAAQDRDLPEAGGGCVQDGQSYSDKDVWKPEPCRICVCDTG
TVLCDEIICEELRDCPSPEIPFGECCPICPAEPPAATARQPGPKGQKGEPGDIKDVVGPR
GPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGAAGPM
GPRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK
GEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPV
GPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQ
GAPGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLA
GPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGSPGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP
GPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR
GLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAP
GKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPP
GADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP
GAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEP
GEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPP
GPVGPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPV
GPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQ
GLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPA
GPPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGGLRQHDVEVDATL
KSLNNQIESIRSPEGSKKNPARTCRDIKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMET
GETCVYPTPSSIPKKNWWSSKTKDKKHVWFAETINGGFHFSYGDESLSPTTASIQLTFLR
LLSTEGSQNVTYHCKNSIAYMDEETGNLKKALLIQGSNDVEIRAEGNSRFTYSVLEDGCT
KHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVDIGPVCFL
NT seq 4467 nt   +upstreamnt  +downstreamnt
atgcccggccgcctcgcagccttcctcctcctcctcctcttcctcctcctcgggctcgcc
gccgctcaggaccgggacctcccggaggccggcggcggctgcgtgcaggacgggcagagc
tacagcgacaaggacgtgtggaagccggagccctgccgcatctgcgtctgcgacaccggc
accgtgctgtgcgacgagatcatctgcgaggagctgcgggactgccccagccccgagatc
cccttcggagagtgctgccccatctgccccgccgagccccccgccgccaccgcccgacaa
cctggccccaagggacagaaaggtgaacccggcgatatcaaagatgttgtaggaccccga
gggcctccgggaccgcagggcccggcaggcgagcagggacagcgaggggaccgcggcgag
aaaggggagaagggtgctcccggcccccgcggcagggatggagaacctgggacccccggc
aaccccggcccccccggcccccccggacctcccggcccccctggactcggtgggaacttc
gcggctcagatggcgggcggcttcgacgagaaggctggcggcgcgcagatgggcgtcatg
cagggacccatgggccccatgggaccccgcggcccccctggccccaccggcgctcccggt
ccccaaggatttcaaggcaaccccggcgagcctggcgaacccggcgctgctggtccgatg
ggtccccggggacctccgggacctcctgggaaacccggtgacgacggcgagacaggcaaa
cccggcaaatccggcgaacgtggcccccccggcccccagggtgctcgcggcttccccggg
acccccggtctgcccggagtgaaaggacaccgtggttaccccggcttggacggtgccaaa
ggcgaggcaggagcccccggagccaagggcgaatccggctcccccggcgagaacggctcc
cccggccccatgggtccccgcgggctgccaggagagcgaggacgtcccggcccctccggc
gctgcgggtgctcgcggcaacgacggtctccccggccccgctggcccccccggacccgtt
ggcccggccggagcccccggcttccccggcgcccccggctccaagggtgaagcgggtccc
accggcgcacgaggtcccgagggtgcccaaggtccccgcggcgaatccggcacccccggc
tcccctggccccgccggcgcccccggcaaccccggcaccgacggcatccccggagccaag
ggctcggcgggtgccccgggcatcgcgggcgctccaggcttccccggcccccgcggcccc
cccggaccccaaggtgccaccggcccactgggacccaagggacagacgggcgaacccggc
atcgcgggcttcaaaggcgagcaaggacccaagggcgagacgggccccgcaggaccccaa
ggtgcccccgggccggctggggaggaaggcaagagaggagcccgtggggaacccggtgct
gccggccccgtgggcccccccggagaaaggggtgctcccggcaaccgcggcttccccggg
caagacgggctggctggacccaagggtgctccgggtgaacgcggccccgctggcctcgct
ggtcccaagggtgccaccggtgaccccgggcgtcccggagagcccgggctgcccggagca
aggggtctcaccggccgccccggcgatgctggacctcaaggcaaagtcggccccaccggc
tctcccggcgaggacggtcgccccggcccacccggccctcagggtgcccgtgggcagccc
ggcgtgatgggtttccccggtcccaaaggcgctaacggtgagcctggaaaagctggcgaa
aaagggttgcccggtgccccggggctgcggggtcttcctggcaaggatggtgagacagga
gctgccggcccccccggacctgctggtcccgctggtgagagaggagagcaaggagccccc
ggtccctccggcttccaggggctgcccggcccaccaggtccccccggagagagcggcaaa
cccggagaccagggtgttcccggagaagccggtgcccccggtctcgtcggtcccagaggc
gaacgcggcttccctggtgagcgcggctcccccggcgcacaagggctgcagggtccccgc
gggctccccggcacgccaggcaccgacggacccaagggtgcaaccggcccggccggcccc
aacggcgcccaaggacccccagggctgcagggaatgcccggagagagaggagcagctggc
atcgccggccccaagggtgaccggggagacgtcggcgagaagggtcccgagggagctcca
gggaaggacggcgcacgcggtctgaccggtcccatcggcccccccggccccgctggcccc
aacggcgagaagggtgaatccggcccccccggtccatctggcgctgccggtgcccgcggt
gcccccggcgagcgtggcgagcccggtgcccccggtcctgctggatttgccggccccccg
ggcgccgacggacaacccggtgccaaaggcgagcaaggagagcccgggcagaagggtgac
gctggcgctcccggtccccaaggtccctcgggtgctcccggcccccagggtcccactggt
gtaactggtcccaaaggagcccgcggtgctcagggtccccccggagccaccggattcccc
ggagccgccggccgcgtgggaccacccggccctaatggtaacccaggcccccctggcccc
cctggctctgctggcaaagatggtcccaagggtgctcgtggcgacgccggtcccccgggc
cgtgccggagaccctgggctccaaggccctgctggcccccctggcgagaaaggcgaaccc
ggagaggacggccctgcgggtcccgacggtccccccggtccccaaggcttggcaggacag
cgcggcatcgtcggtctgcccggacagcgcggcgagagaggcttccccgggctgccaggg
ccatcaggcgaacccggaaagcaaggagcacccggctctgcgggcgaccgaggccccccc
ggccccgtgggtccccccggtctcactggacctgctggcgagcctgggcgtgagggcaac
cccggtgctgatggccccccaggcagagacggcgcagccggcgtgaagggcgatcgcggc
gagaccggccccgtgggtgcccccggcgctcccggtgcccctggcgctcccggccccgtt
ggtcccaccggcaaacaaggagacagaggcgagacgggtgcacaagggcccatgggtccc
tccggtcctgcaggcgctcgaggcatgccgggtccccaagggcctcgtggtgacaaaggt
gagactggagaggctggagagagagggctgaagggccaccgcggcttcaccggactgcag
ggtcttcccggcccccctggtccttctggagaccaaggcgctgctggtcctgctggtccc
tccggccccagaggtccccccggccccgtcggcccctccggcaaagacggctccaacggc
atgcccggccccatcggcccccccggcccccgcggacggagcggcgaacccggccctgcg
ggtcctcctggaaatcccggcccccccggtccccccggccctcccggcaccggtatcgac
atgtcagctttcgccggcctgggtcagacggagaaaggccccgaccccatccgctacatg
cgggcggacgaggccgccggcgggctgcggcagcacgacgtcgaggtggacgccaccctc
aagtccctcaacaaccagatcgagagcatccgcagccccgagggctccaagaagaacccg
gccaggacctgccgcgacatcaagctctgccaccccgactggaagagcggagactactgg
atcgacccgaaccagggctgcaccctggatgccatcaaggttttctgcaacatggagacg
ggcgagacctgcgtctacccgacccccagcagcatccccaaaaagaactggtggagcagc
aagaccaaagacaagaagcacgtctggttcgcagagaccatcaacggcggcttccacttc
agctacggcgatgagagcctttcccccaccaccgccagcatccagctgaccttcctccgc
ctgctgtccaccgagggctcccagaacgtcacctaccactgcaagaacagcatcgcctac
atggacgaggagacgggcaacctgaagaaagccctcctcatccagggctccaacgacgtg
gagatcagggccgagggcaacagcaggttcacctacagcgtcctggaggacggctgcacg
aaacacactggcaaatggggcaagacagtcatcgagtaccggtcgcagaagacctcgcgc
ctgcccattgtagatattgcacctatggacattggtggcgccgagcaggagtttggcgtg
gatatcggccccgtctgcttcttgtaa

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