Aythya fuligula (tufted duck): 116500022
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Entry
116500022 CDS
T07966
Symbol
COL2A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful04510
Focal adhesion
aful04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116500022 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116500022 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aful00536
]
116500022 (COL2A1)
Glycosaminoglycan binding proteins [BR:
aful00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116500022 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
116500022
NCBI-ProteinID:
XP_032060808
UniProt:
A0A6J3EHH6
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All DBs
Position
29:complement(1678093..1698052)
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AA seq
1488 aa
AA seq
DB search
MPGRLAAFLLLLLFLLLGLAAAQDRDLPEAGGGCVQDGQSYSDKDVWKPEPCRICVCDTG
TVLCDEIICEELRDCPSPEIPFGECCPICPAEPPAATARQPGPKGQKGEPGDIKDVVGPR
GPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGAAGPM
GPRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK
GEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPV
GPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQ
GAPGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLA
GPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGSPGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP
GPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR
GLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAP
GKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPP
GADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP
GAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEP
GEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPP
GPVGPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPV
GPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQ
GLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPA
GPPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGGLRQHDVEVDATL
KSLNNQIESIRSPEGSKKNPARTCRDIKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMET
GETCVYPTPSSIPKKNWWSSKTKDKKHVWFAETINGGFHFSYGDESLSPTTASIQLTFLR
LLSTEGSQNVTYHCKNSIAYMDEETGNLKKALLIQGSNDVEIRAEGNSRFTYSVLEDGCT
KHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVDIGPVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccgcctcgcagccttcctcctcctcctcctcttcctcctcctcgggctcgcc
gccgctcaggaccgggacctcccggaggccggcggcggctgcgtgcaggacgggcagagc
tacagcgacaaggacgtgtggaagccggagccctgccgcatctgcgtctgcgacaccggc
accgtgctgtgcgacgagatcatctgcgaggagctgcgggactgccccagccccgagatc
cccttcggagagtgctgccccatctgccccgccgagccccccgccgccaccgcccgacaa
cctggccccaagggacagaaaggtgaacccggcgatatcaaagatgttgtaggaccccga
gggcctccgggaccgcagggcccggcaggcgagcagggacagcgaggggaccgcggcgag
aaaggggagaagggtgctcccggcccccgcggcagggatggagaacctgggacccccggc
aaccccggcccccccggcccccccggacctcccggcccccctggactcggtgggaacttc
gcggctcagatggcgggcggcttcgacgagaaggctggcggcgcgcagatgggcgtcatg
cagggacccatgggccccatgggaccccgcggcccccctggccccaccggcgctcccggt
ccccaaggatttcaaggcaaccccggcgagcctggcgaacccggcgctgctggtccgatg
ggtccccggggacctccgggacctcctgggaaacccggtgacgacggcgagacaggcaaa
cccggcaaatccggcgaacgtggcccccccggcccccagggtgctcgcggcttccccggg
acccccggtctgcccggagtgaaaggacaccgtggttaccccggcttggacggtgccaaa
ggcgaggcaggagcccccggagccaagggcgaatccggctcccccggcgagaacggctcc
cccggccccatgggtccccgcgggctgccaggagagcgaggacgtcccggcccctccggc
gctgcgggtgctcgcggcaacgacggtctccccggccccgctggcccccccggacccgtt
ggcccggccggagcccccggcttccccggcgcccccggctccaagggtgaagcgggtccc
accggcgcacgaggtcccgagggtgcccaaggtccccgcggcgaatccggcacccccggc
tcccctggccccgccggcgcccccggcaaccccggcaccgacggcatccccggagccaag
ggctcggcgggtgccccgggcatcgcgggcgctccaggcttccccggcccccgcggcccc
cccggaccccaaggtgccaccggcccactgggacccaagggacagacgggcgaacccggc
atcgcgggcttcaaaggcgagcaaggacccaagggcgagacgggccccgcaggaccccaa
ggtgcccccgggccggctggggaggaaggcaagagaggagcccgtggggaacccggtgct
gccggccccgtgggcccccccggagaaaggggtgctcccggcaaccgcggcttccccggg
caagacgggctggctggacccaagggtgctccgggtgaacgcggccccgctggcctcgct
ggtcccaagggtgccaccggtgaccccgggcgtcccggagagcccgggctgcccggagca
aggggtctcaccggccgccccggcgatgctggacctcaaggcaaagtcggccccaccggc
tctcccggcgaggacggtcgccccggcccacccggccctcagggtgcccgtgggcagccc
ggcgtgatgggtttccccggtcccaaaggcgctaacggtgagcctggaaaagctggcgaa
aaagggttgcccggtgccccggggctgcggggtcttcctggcaaggatggtgagacagga
gctgccggcccccccggacctgctggtcccgctggtgagagaggagagcaaggagccccc
ggtccctccggcttccaggggctgcccggcccaccaggtccccccggagagagcggcaaa
cccggagaccagggtgttcccggagaagccggtgcccccggtctcgtcggtcccagaggc
gaacgcggcttccctggtgagcgcggctcccccggcgcacaagggctgcagggtccccgc
gggctccccggcacgccaggcaccgacggacccaagggtgcaaccggcccggccggcccc
aacggcgcccaaggacccccagggctgcagggaatgcccggagagagaggagcagctggc
atcgccggccccaagggtgaccggggagacgtcggcgagaagggtcccgagggagctcca
gggaaggacggcgcacgcggtctgaccggtcccatcggcccccccggccccgctggcccc
aacggcgagaagggtgaatccggcccccccggtccatctggcgctgccggtgcccgcggt
gcccccggcgagcgtggcgagcccggtgcccccggtcctgctggatttgccggccccccg
ggcgccgacggacaacccggtgccaaaggcgagcaaggagagcccgggcagaagggtgac
gctggcgctcccggtccccaaggtccctcgggtgctcccggcccccagggtcccactggt
gtaactggtcccaaaggagcccgcggtgctcagggtccccccggagccaccggattcccc
ggagccgccggccgcgtgggaccacccggccctaatggtaacccaggcccccctggcccc
cctggctctgctggcaaagatggtcccaagggtgctcgtggcgacgccggtcccccgggc
cgtgccggagaccctgggctccaaggccctgctggcccccctggcgagaaaggcgaaccc
ggagaggacggccctgcgggtcccgacggtccccccggtccccaaggcttggcaggacag
cgcggcatcgtcggtctgcccggacagcgcggcgagagaggcttccccgggctgccaggg
ccatcaggcgaacccggaaagcaaggagcacccggctctgcgggcgaccgaggccccccc
ggccccgtgggtccccccggtctcactggacctgctggcgagcctgggcgtgagggcaac
cccggtgctgatggccccccaggcagagacggcgcagccggcgtgaagggcgatcgcggc
gagaccggccccgtgggtgcccccggcgctcccggtgcccctggcgctcccggccccgtt
ggtcccaccggcaaacaaggagacagaggcgagacgggtgcacaagggcccatgggtccc
tccggtcctgcaggcgctcgaggcatgccgggtccccaagggcctcgtggtgacaaaggt
gagactggagaggctggagagagagggctgaagggccaccgcggcttcaccggactgcag
ggtcttcccggcccccctggtccttctggagaccaaggcgctgctggtcctgctggtccc
tccggccccagaggtccccccggccccgtcggcccctccggcaaagacggctccaacggc
atgcccggccccatcggcccccccggcccccgcggacggagcggcgaacccggccctgcg
ggtcctcctggaaatcccggcccccccggtccccccggccctcccggcaccggtatcgac
atgtcagctttcgccggcctgggtcagacggagaaaggccccgaccccatccgctacatg
cgggcggacgaggccgccggcgggctgcggcagcacgacgtcgaggtggacgccaccctc
aagtccctcaacaaccagatcgagagcatccgcagccccgagggctccaagaagaacccg
gccaggacctgccgcgacatcaagctctgccaccccgactggaagagcggagactactgg
atcgacccgaaccagggctgcaccctggatgccatcaaggttttctgcaacatggagacg
ggcgagacctgcgtctacccgacccccagcagcatccccaaaaagaactggtggagcagc
aagaccaaagacaagaagcacgtctggttcgcagagaccatcaacggcggcttccacttc
agctacggcgatgagagcctttcccccaccaccgccagcatccagctgaccttcctccgc
ctgctgtccaccgagggctcccagaacgtcacctaccactgcaagaacagcatcgcctac
atggacgaggagacgggcaacctgaagaaagccctcctcatccagggctccaacgacgtg
gagatcagggccgagggcaacagcaggttcacctacagcgtcctggaggacggctgcacg
aaacacactggcaaatggggcaagacagtcatcgagtaccggtcgcagaagacctcgcgc
ctgcccattgtagatattgcacctatggacattggtggcgccgagcaggagtttggcgtg
gatatcggccccgtctgcttcttgtaa
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