Aythya fuligula (tufted duck): 116500604
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Entry
116500604 CDS
T07966
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
aful
Aythya fuligula (tufted duck)
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aful03021
]
116500604 (CHD1)
03036 Chromosome and associated proteins [BR:
aful03036
]
116500604 (CHD1)
Transcription machinery [BR:
aful03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116500604 (CHD1)
Chromosome and associated proteins [BR:
aful03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
116500604 (CHD1)
SLIK complex
116500604 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
116500604
NCBI-ProteinID:
XP_032061611
UniProt:
A0A6J3ED15
LinkDB
All DBs
Position
Z:complement(56903640..56955148)
Genome browser
AA seq
1720 aa
AA seq
DB search
MNGHSDEESVRNSSGESSRSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDTSREKKQVQAKPPKVDGTEFWKSSPSILAVQRSAVLKKQQQQQKAVSSDSVSE
EESSSSEDSADDSSSETKKKKHKDEDWQMSGSGSVSGTGSDSESEEDGDKSSCEESESDY
EPKNKVKSRKPPSRIKPKSGKKTAGQKKRQLDSSEDDDDEEEDYDKRGSRRQATVNISYK
EAEETKTDSDDLLEVCGEDVPQTEEDEFETIEKFMDSRVGRKGATGAATTIYAVEADGDP
NAGFEKSKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRWL
KNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSW
EDGALIAKKFQTRIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGQESLELRD
YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT
SWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFL
GGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQK
QYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHL
IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELR
KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ
KKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKE
ELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVAN
FSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQISFN
GSEGRRSRSRRYSGSDSDSITERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGG
PLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSCGQERAGGRLGKVKGPTFR
ISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLV
GIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQ
RLAGAGNSKRRKTRTKKNKIKASKIKEEVKSDSSPQPSEKSDEDDDEEDNKVNEIKSENK
EKNKKIPLLDTPVHITATSEPVPISEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGL
SEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYK
HAIKKRQESQQHNDQNISSNVNTHVIRNPDVERLKETTNHDDSSRDSYSSERHLSQYHDH
HKDRHQGDAYKKSDSRKRPYSAFSNGKDHRDWDHYKQDSRYYSDSKHRKLDDHRSRDHRS
NLEGNLKDSRPHSDHRSHSDHRIHSDHRSASEYSHHKSSRDYRYHSDWQMDHRASGSGPR
SPLDQRSPYGSRSPLGHRSPFEHSSDHKSTPEHTWSSRKT
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagtgtaagaaacagcagtggagagtcaagtcgatca
gatgatgattctgggtcagcatcaggttctggatctggttcaagctctggaagcagtagc
gatggaagtagcagccagtcagggagcagtgactctgactctggttcagagtcaggcagt
caatcagaatcggagtccgacacatctagagagaagaaacaagtacaagctaaaccacca
aaagttgatggaactgagttttggaagtccagtccaagtatacttgctgtacagagatca
gcagtgctcaagaagcaacagcaacagcaaaaggcagtatcatcagacagtgtttctgaa
gaggagtcatccagtagtgaagattctgctgatgactcatccagtgaaaccaagaagaaa
aaacataaagacgaagactggcaaatgtcagggtcaggatcagtatcaggaactggttct
gattctgaatcagaggaagatggggataaaagtagttgtgaagaaagtgaatctgactat
gagccaaaaaacaaggtcaaaagccggaaacctccaagcagaattaagccaaaaagtggg
aaaaagactgcaggacagaaaaagaggcaacttgattcatctgaggatgatgatgatgag
gaggaggattatgataagagaggatctcgtcgccaggcaacagtcaacattagttacaaa
gaagctgaagaaaccaagacagattctgatgatttgctggaagtttgtggagaagatgtc
ccacaaactgaagaagatgaatttgaaactatagaaaagtttatggatagtcgagttggc
cgaaaaggagccactggtgccgcaaccactatctacgcagttgaggcagatggtgaccca
aatgctgggtttgaaaagtcaaaggagccaggagaaatacagtatcttattaaatggaaa
ggctggtcacacatccataacacttgggaaactgaggaaacactgaagcaacaaaatgtt
aaaggaatgaagaaactggacaactacaagaaaaaagatcaggaaacaaaacgatggctg
aaaaatgcttctccagaagacgtggaatattataactgccagcaggagcttacagatgat
ctacataagcagtatcagatagtggaaagaataattgctcattcaaatcaaaagtcagca
gctggttatccagactactattgcaaatggcagggtctaccttattcagaatgtagctgg
gaagatggtgctctcattgccaaaaagtttcagacacgcattgatgagtattttagcaga
aatcaatccaaaaccactccttttaaggactgcaaggttctaaaacagagaccaagattt
gttgcactaaagaagcaaccatcttacattggaggacaggaaagtttggagttaagagat
tatcagttaaatggattgaattggcttgctcattcgtggtgcaaagggaatagttgtatt
cttgcagatgaaatgggtctgggtaaaacaatacaaacaatttcttttctgaactacctg
tttcatgaacatcaactgtatgggcctttcctgctggttgtgccactttctactttgaca
tcttggcaaagagagattcaaacttgggctcctcagatgaatgctgtagtttacttagga
gatataaccagcagaaatatgataagaactcatgaatggatgcatccacagaccaaacga
ctgaagtttaacatacttctgacaacatacgaaattttgctgaaggataagtctttcctt
ggcggtctgaattgggcattcataggggttgatgaagctcatcgtttaaaaaatgacgac
tctcttctgtacaagactttaatagactttaagtctaaccatcggcttcttattactgga
actcctctgcaaaactccctcaaagaactttggtctttgttgcacttcatcatgccagaa
aaattttcctcctgggaagattttgaagaggagcatggcaaaggaagagagtatggttat
gcaagtcttcacaaagagcttgaaccgtttttgctgagaagagttaaaaaagatgtagaa
aagtctttacctgcaaaagttgagcaaattctgaggatggaaatgagtgcattgcagaaa
caatattacaagtggattttaacaaggaattataaagccctcagtaaaggttcaaaaggc
agtacctctggctttctgaacattatgatggaactcaaaaagtgttgtaaccattgctac
ctcattaaaccaccagatgataatgaattctataataaacaggaggccttacagcatttg
atacgtagcagcgggaaactaatccttcttgacaagctactgattcgtctgagagaacgt
ggcaacagagttctgattttctctcagatggtgaggatgctggacatcctagcagagtac
ctaaagtatcgtcagtttcccttccagagacttgatggatcaataaaaggggaattgagg
aaacaagcactggatcattttaacgcagaaggatcagaggacttttgctttttactgtct
accagagctggaggattaggtataaacttggcatctgctgacactgtagttatatttgat
tctgactggaatccacagaatgatctgcaagcacaagctagagctcataggattgggcag
aagaaacaggttaatatttatcgtctagtcacaaaagggtcagtagaagaagatattctt
gaaagagccaagaagaagatggttctagatcatctagtaattcagagaatggacactaca
ggaaaaactgtactacatacaggttctactccttcaagctcaacaccttttaataaagaa
gaattatcagcaattttaaagtttggtgcagaggaactttttaaagaacctgaaggggaa
gaacaggaaccccaggaaatggatatagatgaaatcttgaagagagctgaaactcgggaa
aatgagccaggtccattaactgtaggagatgagttgctttcacagttcaaggtggccaac
ttttccaatatggatgaagacgatattgagttggagccagaaagaaactcaagaaactgg
gaagaaataatcccagaagtccagaggcgaagaatagaagaggaggaaagacaaaaagaa
cttgaagaaatatatatgctcccaaggatgagaaactgtgcaaaacagatcagctttaat
ggaagtgaaggaagacgcagtaggagcagaagatactctggatctgatagtgactctatc
acagaaagaaaacgtccaaaaaagcgtggaagaccacgaactattcctcgagaaaatatt
aaaggatttagtgatgcagagatcaggcggtttatcaagagttacaagaaatttggtggt
cctcttgaaaggttagatgctgtagctagggatgctgagctggtcgataaatctgaaaca
gaccttagacgtttgggagagcttgtgcataatggatgcattaaagctttaaaggacaat
tcatgtggacaagaaagagcaggaggtagacttgggaaagttaaaggcccaacatttaga
atctcaggagtgcaggtgaatgcaaagctagtcatctctcatgaagaagagttggcacca
ttgcacaaatccattccttcggatccagaagaaaggaaaagatatgtaatcccatgccac
accaaggctgctcattttgatatagactggggtaaagaagatgattccaatctgttagta
ggcatctatgaatatggttatggcagctgggaaatgataaaaatggatcctgatctcagt
ttgacacagaagattttacctgatgatccagataagaaaccccaggcaaagcagttacag
acccgtgcagactacctcataaaattactgaataaagaccttgcaagaaaggaagcacaa
aggcttgctggtgcaggcaattcaaagaggaggaaaacaagaactaagaagaataagata
aaggcttcaaaaataaaagaagaagtaaaaagtgattcatcaccacagccctcagaaaaa
tctgatgaagatgatgatgaggaggataacaaggtaaatgaaatcaaatcagaaaataaa
gaaaaaaataaaaaaattccattgttggatactccagttcacattactgcaacgagtgaa
ccagttcctatatcagaagaatctgaagaactagatcagaagacgtttagtgtgtgcaaa
gaaagaatgaggcctgtcaaagcagcattgaaacagttggatagaccagagaagggtctt
tctgaaagggagcagctggaacatactagacagtgtctaatcaaaattggggatcatatt
actgaatgcctaaaggagtacacaaatccagaacaaattaaacagtggaggaaaaatttg
tggatttttgtctctaagtttacagaatttgatgccagaaagttgcacaaactgtataag
catgcaatcaaaaagcgccaagagtctcagcaacacaatgaccagaatattagcagcaat
gtgaacacacatgtaatcagaaatccagatgtagaaagactgaaagagactacaaatcat
gatgacagtagcagagacagttactcttctgaaagacatctgtcacagtaccatgatcat
cacaaagacaggcatcagggagatgcttacaagaaaagtgactctaggaaaaggccatat
tcagccttcagcaatgggaaagatcacagagactgggatcactacaaacaagacagcaga
tactacagtgatagtaaacataggaagttagatgaccacaggagcagagaccacaggtca
aacctggaaggaaatctaaaagacagccggcctcattcagatcaccgttcgcattcagac
cacaggatacattcagatcaccgttctgcttcagagtacagccatcataaatcttccaga
gattataggtaccactcagactggcaaatggaccacagagcttctggtagtggcccaagg
tcaccactagatcagaggtctccttatggttcaagatctcccctgggacacaggtctcca
tttgaacactcatcagatcacaaaagtacacctgaacatacatggagtagccggaagaca
taa
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