Aythya fuligula (tufted duck): 116500732
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Entry
116500732 CDS
T07966
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
aful
Aythya fuligula (tufted duck)
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aful03041
]
116500732 (YTHDC2)
Enzymes [BR:
aful01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116500732 (YTHDC2)
Spliceosome [BR:
aful03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116500732 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
HA2_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
Ank
Ank_4
AAA_22
ATPase
PhoH
AAA_7
AAA_16
AAA_29
SRP54
ABC_tran
AAA_30
AAA_23
Motif
Other DBs
NCBI-GeneID:
116500732
NCBI-ProteinID:
XP_032061813
UniProt:
A0A6J3EKD5
LinkDB
All DBs
Position
Z:62893718..62927333
Genome browser
AA seq
1366 aa
AA seq
DB search
MEFPSSLTNTERAFVHRLCQSLGLVSKSRGKGSNRYLTVRKKDGSEVIHAVMTCCLVPTT
KHAIQRLIQRFPVTSKERTELLPKTERGNAFAVEAENREINKASGRLNSGIPQVPVKRGE
SEFDYFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCYKNGIPCRI
FCTQPRRLAAIAVAERVAAERREKIGQTVGYQIRLESRVSPKTLLTFCTNGILLRTLMTG
DSALSTVTHVIVDEVHERDRFSDFLLIKLRDVLQKQSNLKLIISSAALDANLFIRYFGSC
PVIHIQGRPFEVKEMFLEDILRSTGYTNKEMSKYKKEKQREVKQQSTLTEWYSAQEDSSK
PESQRQRSVPNLSEEYNLMDDGGDTVFNQLTEKDANCLEPWLIKEMDSCLSDIWLHKDID
SFAQVFHFILTENVSVDYRHSETSATALMIAAGRGFLSQVEQLISMGASIHCKSSNGWMA
LDWAKHFGQTEVVDLLESYSASVEFGNLDESSLVQSSGNDLGAEDRELLKAYHHSFDDEK
VDLDLIMHILYNICHTSDSGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFMLHS
NMQTLDQKKVLRSPPSGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFDALSCVTML
KTVWISKASAIQRKGRAGRCRPGVCFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLL
APINCPIVDFLMKAPDPPPALIVRNAVQMLKTIDAMDPWEDLTELGYHLAELPVEPHLGK
MVLCAVVLKCLDPILTIACTLAYRDPFVLPTLASQKRAALLCRKRLTAGTFSDHMALLRA
FQAWQKARSDGWERTFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGADIRDVNT
NSENWAVVKAALVAGMYPNLVHVDRGNLVLTGPKEKKVRFHPTSVLNQTQYKKIPPANGQ
AAAVQALPTDWLIYDEMTRAHRIANIRCCSVVTSVTVALFCGPARLPRNALQEPSSLRGN
GVSNENSDSELEDEANSNSALLKLDEWLHLKLDSEVACLLLQLRQKWHSLFLRRMRAPSK
PWSQIDETIIKAIITVLSTEEQAAGLQQPSGIGQRPRPMSSEELPLASAWRSTSSRNSSA
ETELPDDSSNAEKILMKSMPPVFQPKKYNKKTTSHSKRTSDDRSDQSSARSTDSSSYPSP
CASPSSTTSGKASQSPSPRSNMPVRYFIMKSSNLQNLDISQQKGIWSTMPNNERKLNRAF
WDSSMVYLIFSVQGSGHFQGFARMSSEIGSEKSQDWGSAGLGGIFKVEWIRKESIPFQFA
HHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDRIPLAEKTQLS
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggagttcccttcttccttgacgaacaccgagcgggccttcgtgcaccggctgtgccag
tcgctcgggctggtatcgaagagcagaggaaaaggatcaaatcgatacctgactgtaagg
aagaaagatggatcagaagtaattcatgcagtaatgacttgttgtttggttccaacgaca
aaacatgccattcagaggttgattcagagatttcctgtcacaagcaaagaacgaacagaa
cttctgccaaagactgagcgaggaaatgcatttgctgtggaagctgaaaacagagaaatc
aacaaggcaagtggacggctgaacagtggtatccctcaggttcctgtgaaaagaggggaa
tcggagtttgattatttcaggcagtcactaccagtttttgaaaaacaggaggaaattgtc
aaaataatcaaggaaaataaagttgttctaattgtgggagagactggatcaggaaaaact
actcaaattcctcagttccttcttgatgactgttacaaaaatggaattccctgtcgtata
ttttgcactcagccaagacgtttggcagctattgctgtggctgaacgagtggcggcagaa
agaagagaaaagattggccagacagttggttatcagatccgattagaaagcagggtttct
ccaaagacactgttaacattttgcactaatggcatactacttcgcacactaatgacagga
gacagtgctctatcaacagtgacacatgttattgtggatgaagtacatgagagggataga
ttcagtgacttcttgttaataaaactgagagatgtattgcagaaacagagtaatttaaaa
ctaatcatttctagtgctgctctagatgcgaatctctttattaggtattttggaagttgc
cccgtaatacacatacaaggaaggccttttgaagttaaagagatgtttttagaggacatt
ttacgaagcactggatatacaaacaaagagatgtcaaagtacaaaaaggagaaacagcga
gaagtaaaacagcaaagcactcttactgagtggtattctgctcaagaagatagtagcaag
ccagaatctcagagacaaagatctgttccaaatctatctgaagagtataatctgatggat
gatgggggtgacacagtatttaatcaactgactgaaaaagatgcaaattgtcttgaacca
tggctaataaaggaaatggattcttgtctttctgacatctggttgcataaggatattgat
tcctttgctcaggtgttccatttcattttaactgaaaacgttagtgttgattataggcac
agtgaaaccagtgcaactgcactaatgattgcagcagggagaggcttcctgagtcaagta
gaacaactgatcagcatgggagcaagtatccactgcaaatcatccaatggctggatggct
ctggactgggctaagcactttgggcagacggaggttgttgacctgttggaatcctacagt
gcatcagtagaatttggaaatctggatgaaagttcccttgttcagtcaagtggtaatgac
cttggagcagaggacagagaattgttgaaagcttatcatcacagttttgatgatgaaaag
gtggatctggacctgatcatgcacatactttataacatctgtcacacttcagatagtgga
gcaattctaatatttcttcctggctatgatgagatagttagcttgagggaccgtattctt
tttgatgacaagagatttgctgacaatgctcacagatatcaagttttcatgcttcattca
aatatgcagactttggatcagaagaaagtgcttagaagtccaccttctggtattcgcaaa
ataattctttctactaatattgcagaaaccagcatcacagttaatgatgttgtatttgtt
attgactcgggcaagatgaaagagaaatcttttgatgcactgagttgtgttacaatgcta
aaaactgtgtggatttcaaaagctagtgccatccagagaaaaggcagggctgggcgctgt
cggcctggagtctgcttccgtctcttcagcaggctcagatttcagaatatgttggaattt
cagactccagaacttctacgaatgccacttcaggagctttgtttacacacaaaactgctg
gctccaattaattgtccaattgttgacttccttatgaaagctcctgatcctccaccggct
ttaattgtgagaaatgctgtgcaaatgcttaagacaatagatgctatggatccttgggaa
gacctcactgaacttggttatcatcttgctgaattaccagtagagccacaccttggtaaa
atggtgctgtgtgctgttgttttgaagtgcctggatcccattcttactattgcttgtact
cttgcatatcgagacccttttgtcctacctacactggcctctcagaagcgtgcagccttg
ctgtgcagaaaacgtttaactgcaggaacgtttagtgaccatatggcacttctcagggct
ttccaggcatggcagaaggcacgaagtgatggctgggagagaaccttctgtgaaaagaac
tttctttctcaggccaccatggaaatcatcataggaatgagaacacaattgcttggtcag
cttagagcttcaggttttgtcagagcccgaggaggagctgatatcagagatgttaacact
aactctgaaaactgggctgtagttaaagctgcattggtggctgggatgtatcccaatcta
gtacatgtggacaggggaaacctggttttgacaggaccaaaagagaagaaagtgcgtttt
catcctacctctgttcttaaccagactcagtataaaaagattccaccagcgaatgggcaa
gctgcagctgttcaggcactccccacagactggcttatatatgatgaaatgacaagagct
cacaggatagcaaatatcagatgttgttcagttgtaacgtctgtcactgtggcactcttc
tgtggaccagctaggttaccacgtaacgctttgcaggagccttcatctcttcgagggaat
ggggtatccaatgagaacagtgatagtgagctggaggatgaagcaaattctaattcagcg
ttactgaagctagatgaatggcttcatctcaaactggactctgaggttgcttgtttgctg
ttgcaactcagacagaagtggcatagcttatttctgcgtcgtatgcgagctccttctaaa
ccgtggtctcaaattgatgaaacgataataaaagcaatcataactgttttaagtactgaa
gaacaggctgcaggtttgcagcagccttcaggaattggtcagaggccaaggcctatgtct
tctgaagaacttcctttagcatctgcatggaggtcaaccagcagtagaaatagctcggca
gaaactgaattgcctgatgactcctctaatgctgaaaaaattttaatgaaatctatgcct
ccagtgttccagccaaagaaatacaacaaaaaaaccacttcgcactccaaacgaacatca
gatgacaggtcagatcaatcatcagcgaggtctacagacagtagtagctatcctagccca
tgtgctagtccttcttcaacaacatctggaaaggcttcccaatctccttcaccaagatca
aatatgccagttaggtacttcataatgaaaagtagcaacttgcaaaaccttgatatttct
cagcagaaaggtatatggtctacaatgccaaacaatgaacgaaaactaaatagagctttc
tgggacagcagcatggtttacttaatattttctgttcaaggatctggacactttcaggga
tttgccagaatgtcttctgagatagggagtgaaaaaagtcaagactggggatctgccggt
ttaggaggtatatttaaggtggagtggatccgaaaagaaagcattccttttcagtttgca
caccatttgctcaacccttggaatgacaataagaaagtacaaataagcagagatggccag
gagctggaaccacaagttggagagcagttgctacaactttgggatcgtattcctttggca
gaaaaaactcaactgagttga
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