Aythya fuligula (tufted duck): 116502346
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Entry
116502346 CDS
T07966
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aful
Aythya fuligula (tufted duck)
Pathway
aful03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116502346 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aful03021
]
116502346 (PCF11)
03019 Messenger RNA biogenesis [BR:
aful03019
]
116502346 (PCF11)
Transcription machinery [BR:
aful03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116502346 (PCF11)
Messenger RNA biogenesis [BR:
aful03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116502346 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
PCF11_RFEG_rpt
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
116502346
NCBI-ProteinID:
XP_032064120
UniProt:
A0A6J3EQN0
LinkDB
All DBs
Position
1:199472379..199493259
Genome browser
AA seq
1690 aa
AA seq
DB search
MSAPEGSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKPHVSQTPHMTVKPPHQTSVQSEKIKPSPSPPLHDIKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNTTSQSDTKASKTSQAEKQNSTKQEKLKAGEKIQKKELDQSE
AKSKSPSPLKNKLPSTKDTKNQESESTKVSEISKRDPRLKRHLQEKPEGKEDEVKEKRRN
VEKKEKEEHKTCEHRPVGSRNKVVNGVVQKQDTPTEESEKQGGKQGRSSNRKRSRSRSPK
SRSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEPTQAARDERNSN
KRNVKQEVRDPRRVKKAQEDRPQETASQHSTKASPDPKENAENWQGSKAGKRWKSGWEEN
KNSQQSEEHQALGKAPHQRHRENWTAAKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLASGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCVLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFD
RKEPFGERSRRHSPVSGTNRPFPDNLSPLESRRRLEEQNATKGARGSKTFDPYDSWGESE
EFRDALRQQGKGTPEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRARYED
LEKAPFPESPGARFGGIEAKQRISALMEDRPLFDGSPRQPPARVGVDGPGSPFGDGPAAG
STSRIDGPPGQAALRFEGPLVGAGASQFDGPLAGAGGSGALRFEGPPGQLAGALRFEGPP
GQVGGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFDGPRGQPSGGLRFEGPHG
QPLGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHG
QPMGPHGPSGGGLRFEGPHGPPGVGPRLIDGPVHQGAGGLRFDGPLGRTGPRFDGCHAGF
DGQPGQLSLLQRFDGIHGQPGPRFERAPGQQGQARFDTAIPQRFDGPHQPASRFDLPLGL
QGARFENVANHPASRLEMSPYGQGGPFVDHPSQGYNGPSHGMQFQRPDIFDGSPGPNFNG
PAGPGAQNFSLRASGHYFDEKNLQGPQYGGFNSMAVGSNQVSLMSAQPGPYGQGQQYLPN
PGSFVQNPAGGLPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQVNETSAQPAA
EEEDDDQSDQDVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLD
WHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQEA
AKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQ
NTSSFDCTPSPSKNPVESPLNIMLNIGKQETQESCDSPKVKEEPDDTPPACAEESTPAST
DIKTEPDESV
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagggcagcgctggtagcagcgaggcccgggaggacgcgtgtcgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgtgggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcccttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacagaagaatttgacacaagagcaa
ctgataaggcagcaattgcttgcaaagcaaaaacagttgttagaacttcagcaaaaaaaa
ttagagctggagctggaacagactaaagcacagttggctgtttctcttagcgttcagcaa
ggatcatctactatagcttcagttccagcaccttccaagccacatgtgtcacagacacct
catatgacagttaaaccacctcatcagacttctgtgcaatctgaaaaaatcaaaccatcc
ccaagtcctccacttcatgatatcaaaatagtaaatagggatcctcgacttaataggatg
gctcaacattcttctcatgctaaagatcaatctcataggaaagaatttccaccaaacaca
accagtcagtctgataccaaggcaagcaaaacatcacaggctgaaaaacaaaactccaca
aagcaagagaaattgaaagcaggtgaaaaaatacagaagaaagagcttgatcagtcagaa
gcaaaatctaaatcaccatctcctttgaaaaacaagttacccagtactaaagatactaaa
aaccaggaaagtgaaagcacaaaagtatctgaaatcagtaaacgggatccaagactgaaa
agacatcttcaggaaaagccagagggcaaggaggatgaggtgaaagagaagaggagaaat
gtagagaaaaaagaaaaagaggaacataagacgtgtgaacatagaccagtaggcagcaga
aataaagtagttaatggtgttgttcagaaacaagacacacctacagaagaatcagaaaaa
cagggtggaaaacaagggagatcaagtaacagaaaacggtcacggtcacgctctcctaag
tcacggtcaccatctacacattctccaaaaagaagagagaggagatcacccaaaagaaga
ctcagaagcttatctcccacttcgtcaactcctaaaatcggaaagatacgtcagataggt
cctaagcagtctcatgttgaagaacccacacaggcagcaagagatgaaagaaattctaat
aagcggaacgtgaaacaagaggtgcgagatccacggagagtgaaaaaagcccaagaagac
aggcctcaagaaacagcaagtcagcattctacaaaagcttctcccgatccaaaggagaat
gcagaaaactggcagggatccaaagcaggcaagaggtggaaatctggttgggaagaaaac
aaaaactcgcagcagagtgaagagcaccaagcacttggtaaagctcctcaccaaagacac
cgggaaaactggactgctgctaaaggaattttatcaccccgagcaccaaagcagcagcac
aggttaagtgtggatgccaatttacaaattcctaaagaattgacatctgcaagcaagaga
gaattacttaaaaaggccaatgatcgcttagcatctggtgaaataactcaagatgaattc
ctcatggtagctcatcagattcgacagctgttccagtaccaggaagggaagcacagatgt
aatgtgtgggatagccctacagaggagaaatgtgttttgaaaaagaaacctcttctatct
gatgcagaattaacatactacgaacacaaagctaaattaaaaagaacccaagttcagcat
tcattatcaaggcttgatctgttggatcccgatgatattttggattatcatttacctgat
gcgttgctttctggaatagaatgtgagcaagcaaaagcaaagcgtggagtacagtttgac
agaaaagagccatttggagaaagatctaggaggcattctcctgtaagtggcactaacaga
ccttttcctgataacctttcaccgcttgagagtcgacgaagacttgaggaacaaaatgct
actaaaggagcaagaggttctaaaacattcgatccttatgacagctggggagaatcagag
gaatttagagatgctctcagacaacagggaaaaggcacaccggagttccagaaaatagat
ggtgatgcaatttgcagatttgataatcgtgaagaaagacagcttctcgggcaagctggt
gttcgagaggaaccaagatcgccattcagtgagcgtttcaaaagagctagatatgaagat
ctggagaaagcaccatttccagaaagtccaggagcaagatttggaggcattgaagccaag
cagagaataagtgcactaatggaagacagacctctatttgatggctcacctagacaacct
cctgcaagggttggggtagatggaccaggaagtccttttggtgatggtcctgctgctggt
tcaacttctcgaattgatgggccacctggacaggctgctctgagatttgaggggccgttg
gtcggagcaggtgcatcacagttcgatggaccactggcgggggcagggggatcaggagcc
ctgagatttgaggggccaccagggcagctggcaggagctctcagatttgaaggaccccca
ggacaggttggaggaggaggtccactgaggtttgagggacctcttgggcctttgcgcttt
gagggtcctgcgggccagcctgtaggtggtcctagatttgaaggacctggagttggtctc
aggtttgacggaccccgtggtcagccttcaggtggtctcaggtttgagggaccccatggt
caacctctggggcctcgaggtcaaccagggggtggtctcaggtttgagggaccccatggt
cagcccttggggcctcatggtcaaccagggggtggtctcaggtttgaggggccacattta
cagcccttggggccccatggtcaacctggaggtggcctcagatttgaggggccacatggg
cagcctatggggccacatggaccatcaggaggtgggctcaggtttgaggggccacatgga
cctccaggtgtaggtcctaggttgattgacggaccagtacaccagggagctggtggactt
agatttgatggtcctctgggacggacgggtccaagatttgatggctgtcatgctggattt
gatggtcagcctggacagctgtctcttttgcaaagatttgacggaattcatggacagcct
ggcccaagatttgaaagggcacctggccagcagggacaggcacgattcgatacagccata
cctcaaagatttgatggtcctcaccagccagcctcaaggtttgacctgccccttggcctt
caaggtgcacggttcgaaaatgtagctaaccatcctgcctcaagattagaaatgtcgcca
tacggacaaggcggtccgttcgttgatcatcccagccagggctacaatggaccatctcat
gggatgcagttccagaggcctgacatatttgatggttcgccaggaccaaatttcaatggg
ccagctggcccaggagcacagaatttctcattgagagcatctggacattattttgacgaa
aaaaatcttcagggtcctcaatatggaggcttcaatagtatggcagtgggaagtaatcag
gtttcgctcatgtctgctcagccaggaccgtatggccaaggtcagcagtatttgccaaat
cctggaagctttgttcagaaccctgcaggaggccttccacattcgtatcctgataaccac
cttggccagcttgatgtcaatgaattgtttgctaaactgttgtcaacaggaattctcaaa
ctgtcaaaaactgattccacttcagcacaagtgaatgaaacatcagcccagccagctgct
gaagaggaggatgatgaccagagtgatcaagatgtcccagacctcacaaactttacagtt
gaagaactcagacagcgttatgatagtgttattaatcgactatacactggaattcagtgt
tactcatgtggaatgagattcactacttcacagacagatgtttatgccgatcacttagat
tggcattatcgccagaaccgcacagaaaaagatgttagcagaaaaattactcacagaagg
tggtactacagtttaacagattggattgaatttgaagaaatagctgatctagaggaacgt
gcaaaaagccaattttttgaaaaagctcatgaagaagttgtgctcaagacacaagaagct
gcaaaagagaaagagtttcagagtgtccctgctggaccagctggagcagttgaaagctgt
gaaatttgccaagagcaatttgaacaatattgggacgaggaagaggaagagtggcaccta
aagaatgctatacgagtagatgaaaagatttaccatccatcttgttatgaagactaccaa
aacacatcatcatttgattgcacaccatctcccagcaagaatcctgtagaaagtcctcta
aatattatgttgaacattggtaaacaagaaacacaagagtcctgtgactcgcctaaagtc
aaagaagaacctgatgacacccctcctgcctgtgcagaagagagcacacctgcatctaca
gatattaaaacagaacctgatgagtctgtttaa
DBGET
integrated database retrieval system
