Anopheles funestus (African malaria mosquito): 125762175
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Entry
125762175 CDS
T09273
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
afun
Anopheles funestus (African malaria mosquito)
Brite
KEGG Orthology (KO) [BR:
afun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afun03016
]
125762175
Enzymes [BR:
afun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
125762175
Transfer RNA biogenesis [BR:
afun03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125762175
Prokaryotic type
tRNA splicing ligases
125762175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
125762175
NCBI-ProteinID:
XP_049279971
LinkDB
All DBs
Position
2:complement(89516744..89518531)
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AA seq
506 aa
AA seq
DB search
MVVREYNEEMKYIERLSENSFLIKKGFQSNMNVEGIFYANSKLEKLMFDELRNACRPGMT
GGFLPGVKQIANVAALPGIVGRSVGLPDIHSGYGFAIGNMAAFDMNDPTSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPVKELLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVEEIYD
KYAASKMGIEELGQICVMIHSGSRGFGHQVATDALVEMEKAMKRDKIETNDRQLACARIN
SPEGQNYLKAMSAAANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKME
EHMVNGKPKQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGSMGTCSFVLTGTETGM
VETFGSTCHGAGRSLSRAKSRRNLDYKEVLRDLEAKGISIRVASPKLVQEEAPDSYKDVV
DVVQTCHDVGISNKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtccgagagtataacgaagagatgaagtacatcgaacggctttcggagaacagc
ttcctaataaaaaagggcttccaatctaacatgaacgtggaaggcatattctacgccaac
agtaagctggaaaagcttatgttcgacgagctgcgcaatgcctgccggcccgggatgact
ggtggatttcttcccggtgttaagcagatagcgaacgttgccgctttaccgggtatcgtt
ggacgctccgtcggtcttccggatattcactccggatatggatttgcaatcggtaacatg
gcggcatttgatatgaacgatccgacctcgattgtgtcgcccggtggtgtcggattcgac
atcaactgtggcgtacgtttgctacgaactaatttgttcgaaaaggatgtacaaccggta
aaggaattgcttgctcagagtctcttcgatcacattcccgtaggggtcggatcgaaaggt
atcattccaatgaatgcacacgatctggaagaagccttagaaatgggaatggactggtcg
ctgcgtgaaggatatgtttgggcagaagacaaggagcactgtgaagagtacggccgaatg
ttgaatgctgacccgagcaaagttagcttgcgggcgaagaagcgtggtcttccgcagctc
ggcacgctaggcgctggtaatcactatgccgaaatacaggtggtggaagaaatctacgat
aaatacgccgccagcaaaatgggcatcgaagagctcggacagatctgcgtcatgatccat
tcgggaagcagaggttttggtcatcaggtagcaacagacgcactggttgaaatggaaaag
gccatgaagcgggacaagatcgaaacaaacgatcgacagttggcctgtgcccgtatcaat
agtccggaaggtcaaaactatctaaaagcaatgtcggctgctgccaactttgcttgggta
aaccgcagctcaatgacgttcctcacaaggcaagcgtttgcaaaacaattcaacaccacg
ccagacgatttggacatgcacgttatctacgacgtttcacacaacgtggccaaaatggag
gaacacatggtgaatggtaaaccgaagcagctgcttgttcaccggaaaggatcgacccgt
gcattcccaccgcatcatccgctgattcccgtcgattaccagcttaccggccaaccggta
cttgtcggtggatcaatgggcacgtgcagctttgtgctaacgggtacggaaacgggcatg
gtggaaacgttcggttcgacatgccatggtgctggtcgcagcttgtcccgtgccaaatcg
cgacgaaatctggactacaaggaggtacttcgggatctggaagcgaaaggcatttcgatt
cgtgtcgcttccccgaagctggtgcaggaggaagcaccggattcgtacaaagatgttgtg
gatgtggttcaaacgtgccacgatgtaggtataagcaataaagctattaaactgcgcccg
attgcagttattaaaggttaa
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