Anopheles funestus (African malaria mosquito): 125765901
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Entry
125765901 CDS
T09273
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
afun
Anopheles funestus (African malaria mosquito)
Pathway
afun03013
Nucleocytoplasmic transport
afun03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afun00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125765901
03015 mRNA surveillance pathway
125765901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afun03019
]
125765901
Enzymes [BR:
afun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125765901
5.6.2.5 RNA 5'-3' helicase
125765901
Messenger RNA biogenesis [BR:
afun03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125765901
mRNA cycle factors
Common to processing body (P body) and stress granule
125765901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
NAT10_TcmA_helicase
NPHP3_N
DEAD
AAA_22
ATPase
nSTAND3
SRP54
AAA_16
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
125765901
NCBI-ProteinID:
XP_049287380
LinkDB
All DBs
Position
2RL:11660208..11665362
Genome browser
AA seq
1157 aa
AA seq
DB search
MSVDAYDGTTGSQSLTFVDTEENFFVGADSQGTEYDFRDFTIPSQSQTQASQLDHLGGGS
QVNGFGRRIGADPTKLSGITSAIGELQFEEDEDELDPVENKDLPPHACRYCGIHEPSTVV
MCNICKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHADAPLGETVLECYSCAVRNVFVLG
FIPAKSDSVVVLLCRQPCAAQNSIKDMNWDQEQWKPLIADRCFLFWLVKSPTEQDQLRAR
KVSAAQINKLEELWKENVDATFQDLEKPGIDKEPQQVQLRYVDGYQYQNTFGPLVKLEAD
YDEKLKESQTQENIEIRWDTGLNKKTIAYFTLAKNDGDMKLMHGDELKLRYVGELHKPWS
CIGHVIKVPDNYGDDVGLELKHNHQAPIERTSNFSVDFIWKGTSFERMQQALRKFAMDAK
SVSNYIYTRLLGNVRADGAEEVLFRLNLPKHFSAPNLPDLNRSQVYAVRHALQRPLSLIQ
GPPGTGKTVTSATIVYQLARLNSGPILVCAPSNTAVDQLTEKIHRTNLKVVRVCARSREA
IDSPVSFLALHNQIRNMAQNSELKKLQQLKDETGELSLSDERRYRSLKKQAERELLEAAD
VICCTCVGAGDLRLQRIKFNSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVM
CKKAAKAGLSQSLFERLVALGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCADERK
LKVDFPWPSLECPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLKAGIKPEQIGI
ITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRANEHQGIGF
LNDPRRLNVALTRAKYGIIIVGNPKVLAKQELWNHLLNFYKDKKVLVEGSLNNLKESMIQ
FTKPKKIINTLNPGSHFMTNAMYDAKEVLGGGYFDRNPGPSSSYTHNPLAGYGSMNAYHH
QPGGFMEMANHGSGSSSANANTPLDAFMRKVHDPIGYISPQRSHPAVSNMPVPVGMFINM
SNAPSRFYQQQQAAAIQAAKQTRRPVVGKTASQLLAAGSGSSSGGKSSRPRPIGPPSSSH
GMNSAAGASLTQGMSQNMSQPGFSLSQQPEFSQDYMGDYQSQMDNILSQESNYHSQSGPG
DRLAFELHSSSQFSQPY
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcttacgacggaacaactggttcccaatcgctgacctttgtcgatacg
gaagaaaacttcttcgtgggagcagattcgcagggtacggagtatgattttcgcgatttt
accattccttcgcaaagtcaaacccaagcctcacagctcgatcaccttggcggaggcagt
caggtaaatggattcgggcggcgtatcggcgctgatccgacgaagctgtccggcattact
tcggcaatcggggaactgcagttcgaggaggatgaggatgagctggacccagtggagaat
aaggatctgcccccacatgcgtgtcgctactgtggtatacacgagccaagtacggtggtt
atgtgtaatatctgcaaaaaatggttctgtaacggacgtggaagcacgtctggatcgcac
attgtgaatcatcttgtgcgggctaagcaccgggaggtaacgttgcatgcggatgctcct
ctcggcgagacggtgctagagtgttattcttgtgccgtgcggaacgtgtttgtactaggg
tttattcccgccaaaagcgattccgtcgttgtactgttgtgcagacaaccatgtgccgca
cagaattccatcaaggacatgaactgggatcaggaacaatggaagccgctgattgccgac
cgctgcttcctattttggttggtaaagagtccaaccgagcaggatcagttgcgtgcgcgc
aaagtgtctgcggcgcagattaacaagctggaggagctgtggaaagaaaatgttgacgca
acgttccaggacctggagaagccaggcattgacaaggaaccgcagcaagtacagctacgg
tacgtcgacgggtatcagtaccaaaacacattcggaccgctagtgaagctggaagcggat
tatgatgaaaagctgaaggaaagccaaacgcaggaaaacatcgaaatccgttgggatacg
gggctgaacaagaagacgatcgcttacttcacgcttgcgaagaacgacggcgatatgaag
ctgatgcacggagatgaactgaaactgcgctacgtcggagagctgcacaagccgtggagt
tgcattgggcacgtaatcaaggtgccggacaactatggcgacgatgtgggcttagagctg
aagcacaaccatcaggcaccgatagagcgcacgagcaacttctcggtcgatttcatctgg
aagggtacgtcattcgagcgaatgcagcaagcgctgcgcaagtttgcgatggatgctaaa
agtgtttcgaactatatttacacgcgtttgctcggaaatgtccgggccgatggtgctgag
gaggtgctgttccggttgaatctgcccaagcatttcagcgccccgaatctgcccgatctt
aatcgatcgcaggtgtacgcagtccggcacgcactgcagcgaccgttgagtctgatccaa
ggtccgcccggtacgggaaaaacggttacgtcggccacgatcgtgtatcagctggcgcgt
cttaacagtggaccgatcttggtgtgcgccccgagcaacactgctgtcgatcagctgacg
gaaaagattcaccgtaccaatctgaaagtggtgcgcgtgtgtgcccgatctcgggaagcg
attgattcgccggtcagttttctggcgctgcacaatcaaatacgcaacatggcacagaac
tcggaattgaaaaagttgcagcaactaaaggatgaaaccggcgagctgagcctttcggat
gaacgtcgctatcggtcgttgaaaaagcaagccgaacgcgaactgttggaggcggccgat
gtcatttgctgcacctgtgtaggagcaggcgatcttcgtctgcagcgcatcaagtttaat
tcgatcctgattgacgaatcgatgcagtcgacggaaccggagtgtatggtaccggtggtg
ctgggagccaaacagctcatcctggtgggcgatcactgccagctggggcccgtggtgatg
tgcaagaaggcagccaaggcaggtttgtcacagagcctgttcgagcgactggtggctctc
ggcattcgtcccttcaggctggaggtgcagtaccgaatgcacccggagctgtcgcaattt
ccgtcgaatttcttttacgagggcagtctgcagaacggtgtatgcgcggacgagcgcaag
ctgaaggtggattttccctggccatcgctggagtgtccgatgtttttcctcgtcacccag
ggacaggaagaaatagcgggatcaggtacatcttatctgaaccgcaccgaggcatcgaat
gtggagaaaataacgacccgattcctgaaggccggcattaagccggagcaaatcggtatt
attacaccgtacgagggacagcgggcgtatctggtgcagtacatgcaataccagggctca
ttgcactcgaagctgtatcaggaaatagagattgccagcgtggatgcgtttcagggtcga
gagaaggatatcattatcatgtcctgtgtgcgtgccaatgaacatcagggtatagggttt
ctgaacgatccgcgtcgattgaacgtggcactgacccgtgccaaatacggtatcattatt
gtcggcaacccgaaagtgcttgccaagcaggagctgtggaaccatttgctgaacttttac
aaggacaaaaaggtgctggtggaaggatcgctcaacaatctgaaggaatcgatgattcaa
ttcaccaagccgaagaagatcatcaacacgctgaaccccggatcacatttcatgacgaac
gctatgtacgacgccaaggaggtcctgggaggtggttatttcgatcgtaaccccggacca
tcatccagctacacgcacaatccgctcgccgggtacggtagcatgaatgcctatcatcac
cagccgggtggatttatggagatggccaatcacggcagtggtagcagcagtgcaaacgct
aacacaccgctcgatgcgttcatgcgcaaagttcacgatccgatcggttacatttcgccg
caacgttctcatccggccgtgagcaatatgccggtgccggtgggaatgttcatcaacatg
tcgaacgcaccgtcccggttctatcagcagcagcaggccgcagctatacaggcggccaaa
caaacacggcgcccggtggtaggaaaaacggccagtcaactgcttgccgctggttcggga
tcgagctccggtggtaaatcaagccgaccgcgtccaatagggccaccaagcagcagccac
ggcatgaacagtgctgccggtgcttcacttacgcagggcatgtcgcagaatatgtcccaa
ccgggcttcagtctgtcccagcaacccgagttttcccaggactacatgggtgactatcag
tcacagatggacaacatactgtcgcaagagtccaactaccacagccaatccgggccgggc
gatcggttggcattcgaactgcactccagttcacagttctcgcaaccgtactga
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