Aequoribacter fuscus: EYZ66_01455
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Entry
EYZ66_01455 CDS
T07243
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
afus
Aequoribacter fuscus
Pathway
afus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYZ66_01455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afus03019
]
EYZ66_01455
03016 Transfer RNA biogenesis [BR:
afus03016
]
EYZ66_01455
Enzymes [BR:
afus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EYZ66_01455
Messenger RNA biogenesis [BR:
afus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EYZ66_01455
Transfer RNA biogenesis [BR:
afus03016
]
Prokaryotic type
tRNA degradation factors
EYZ66_01455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QHJ87044
LinkDB
All DBs
Position
334739..336697
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AA seq
652 aa
AA seq
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MLDKDALASLKGLKSQMEAEKERVDATIKGTQSRYGFAVLDDGREIFVPPDEMLKVLPGD
RARVCVHPGREGKPVADIEKLIESPMGEFVGTCVTKGKAFFVQPDFGTLTRWLFVPPHAR
NGAKAGDHVRCAMLRHPIKDGKPQAKILRVLGNHSTPGIENQYAVASFGLADEWSPALQK
DVEAAVEAGIILEGRVDLTALGFVSIDAAKTQDIDDALYAETTADGWTLYVAIADPADYI
KPGSRLDQAICARATSVYFHGDVIPMMPELLAQQTCALVEGEPRPALVLKADINNDGEIT
QFKFIEAIIKSHGKLSYYAVDRYLSGNNEDPVMHTSAVEALYQLYRVLRERRSVNELVME
DRQEFRWVLNDQKQIESIEPNEKLTSQKLVEECMVVANRCAARFMLEQQSSGPFVAHSGF
RADRLDEAKQFFERFAPELLEVDPTTVTGYRQIMATLASSEHELPLRQMVNRLLTRASLT
TAGGAHMGMALPAYTNCTSPLRKYADLLVHRQLKALLRDQVDTGIEQGVLDGLSQSIQTA
RDACIYAERWLAANYLKKLTGFKRQVPLGAVVAQISSSGFIARLTDSGLEGFVDLRKDPE
KFSFDKWTASLTSTTRRFQLAQEVAVYCVGFDPKTRVINFELVPDCGLKTAG
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgctagataaagatgcgttggccagccttaaaggcctaaaatcgcagatggaggcggaa
aaagagcgagttgatgcaaccatcaaaggcactcaatctcgctacggttttgccgtactg
gatgatgggcgtgaaatctttgttccgcccgatgaaatgcttaaagtactaccaggtgac
cgcgcgcgcgtgtgcgttcatccgggccgagaaggcaagcctgtcgccgacattgaaaag
ctcatcgaaagtcctatgggcgaattcgttgggacttgcgtgaccaaagggaaagcattt
ttcgtgcaacccgatttcggcactctcacacgctggttgtttgttccgcctcacgcccgt
aatggcgccaaggccggcgatcacgtgcgatgcgccatgttgcgtcaccccattaaagac
ggtaaaccgcaagctaaaattttgcgagtgttgggtaatcattcgacacccggcatcgaa
aatcaatacgccgtagcaagctttggtttggctgacgagtggtctccagctttacaaaaa
gacgttgaggcagcggttgaagcgggtatcattcttgaaggtcgtgtcgatttaaccgct
ttaggttttgtctcgatcgatgccgccaaaacgcaggatattgacgacgccttgtacgct
gaaactactgctgatggttggactctttacgtcgctattgctgacccggcagattatatt
aagcctgggtctaggcttgaccaggctatttgtgcgcgcgcgacctcggtgtattttcac
ggtgatgtcatcccaatgatgcctgaactattggcacagcaaacgtgcgcattagttgag
ggcgagccgcgccccgcgctggtattaaaggcggatatcaacaacgacggtgaaattacc
caatttaagttcatcgaggcgattatcaagtcgcacggcaagttaagctactacgcggta
gatcgctacctgtcgggtaataacgaagaccccgtgatgcacacttctgccgttgaagcc
ttataccagttgtatcgagtattgcgtgagcgtcgctctgtaaacgagctggtcatggaa
gatcgccaagagttccgctgggtgttaaatgatcagaagcagatcgaatcgatcgagccc
aatgaaaagctaacttcgcaaaagcttgttgaagaatgcatggtcgtagccaatcgctgt
gctgcgcgtttcatgctagagcaacaaagcagtggtccttttgtcgctcatagcggtttc
agagccgatcgattggacgaggccaagcagtttttcgagcggtttgcgcctgagcttctg
gaggttgacccaacgactgttacgggataccgccagataatggcaacgctcgccagcagt
gagcatgaactgcctctacgtcaaatggtcaaccgtttgctgacgcgcgctagccttacg
acggcgggtggtgcccacatgggtatggctctgccggcttacactaattgcacatcgcct
ttacgcaagtacgccgatttgttggttcatcgacagttaaaagctttgttgcgagaccaa
gtggatacgggcatcgaacagggcgtgctggatggcttgagtcagagcattcaaactgcg
cgagatgcctgcatctacgcagaacggtggctcgcggccaattacctgaaaaagctgact
ggatttaagcgacaggttcccttgggcgcggtcgtggcgcaaatcagtagcagtggcttt
attgcgcgcttaactgattcaggccttgaggggtttgtcgatttgcgcaaggatcctgaa
aagttcagctttgataaatggacggccagtctgacttcaacgacgcggcgctttcagttg
gcccaagaagtcgcggtgtactgtgttggctttgaccctaaaactcgggtgatcaacttt
gagctggtgccggattgcggcttgaaaacggctggctaa
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