Aequoribacter fuscus: EYZ66_05965
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Entry
EYZ66_05965 CDS
T07243
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
afus
Aequoribacter fuscus
Brite
KEGG Orthology (KO) [BR:
afus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afus03016
]
EYZ66_05965 (rnd)
Enzymes [BR:
afus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
EYZ66_05965 (rnd)
Transfer RNA biogenesis [BR:
afus03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EYZ66_05965 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QHJ87872
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All DBs
Position
1337445..1338566
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AA seq
373 aa
AA seq
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MIDSDSMWVANSDDLERTVASYQSNQAVVLDTEFVRERTYYPKPALVQLAGAGHISLVDP
VAVTDASALSSLLESERTLKVVHSGSEDLEVFQAWLGCPIKGWFDTQVAAALLGYGYAIG
YRNIVETFLGEELDKGETRSDWLQRPLSDSQLQYAIADVLYLEPVFERLYQEAEALGRVE
WVLEEGARAVMGSQNASYDCRVKIGSAWKLPARGLLALMELCGAREQLAVSHNKPRGWIL
DDQSMMQIATALPSSKTQLRPLLSDKSRGAIRHVDRWLLAVSKAVDAPVDQLPEPVAPPM
SAGQRQRMKLIKQRVVGWAADLNIAPEIIFNKSDYAMWVQWLEGGTISIPDHWTGWRRVL
FTERLMHEFSRGE
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgattgattcagacagtatgtgggttgccaacagcgatgacctagaacgcacggtggcg
agctaccagtccaaccaggcggttgtcttggatacggagtttgtccgtgagcgaacctat
taccccaagcccgctttggtgcagttggcgggcgccggacacatcagtttagtcgaccct
gttgccgtcaccgatgcctcagccttgtcgagcttgcttgagtcagagcgcacgctcaag
gtggtgcattctgggagcgaagatttagaggtgtttcaggcatggttgggttgtccgatc
aaaggctggtttgatacgcaagttgctgcagctctgctgggctatggctatgcgataggg
tatcgcaacattgtcgagacctttttgggtgaagagctcgataaaggtgaaacccggtcg
gactggttgcagcgtccactcagtgacagtcagctgcagtatgcgatcgcggatgttttg
tatcttgaaccggtgtttgagcgcttgtatcaagaggccgaagcactggggcgtgtagag
tgggtgttagaggagggtgcgcgtgcggttatgggctcgcagaacgcctcttatgactgt
cgcgttaaaataggcagcgcgtggaagcttccagctcgaggccttttagctctgatggaa
ttgtgcggtgcgcgcgagcaattggctgtcagtcacaacaaaccgcgaggatggatactc
gatgatcaatcgatgatgcaaatcgctacagcattaccctcgtctaagacgcaattgcgc
cctttgctttcagataaaagccgaggcgctattcgccacgtcgatcgttggttgctggct
gtgtctaaggccgttgacgcacctgtagaccaattgcctgagccggtggcgccgccgatg
agtgccggtcaacgacagaggatgaaactcattaaacagcgcgttgtgggctgggccgca
gacttaaacattgcccccgaaattattttcaacaaaagtgactacgccatgtgggtccag
tggctggagggtggcacaatatccatacctgatcattggacggggtggcggcgtgtgctg
tttaccgaacgtttaatgcatgaattttctagaggtgaatga
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