Aequoribacter fuscus: EYZ66_12180
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Entry
EYZ66_12180 CDS
T07243
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
afus
Aequoribacter fuscus
Pathway
afus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYZ66_12180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afus03019
]
EYZ66_12180
03009 Ribosome biogenesis [BR:
afus03009
]
EYZ66_12180
Enzymes [BR:
afus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EYZ66_12180
Messenger RNA biogenesis [BR:
afus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EYZ66_12180
Ribosome biogenesis [BR:
afus03009
]
Prokaryotic type
rRNA helicases
EYZ66_12180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
AAA_19
UvrA_inter
HEM4
Cas3-like_C_2
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QHJ89004
LinkDB
All DBs
Position
complement(2683817..2685364)
Genome browser
AA seq
515 aa
AA seq
DB search
MTDTPAKATFASLNLPAYLQKALDDVGYEVPSDIQTKTIPPLLEGCDVIGQAQTGTGKTA
AFALPILAKIDCRKKQTQCLVLAPTRELAIQVAEAFQSYARHLPGFQVAPIYGGTDYRTQ
LKQLERGAQVIVGTPGRVMDHMRKGSLKLDNLAHLVLDEADEMLRMGFIDDVEWVMSQLP
EKRQIALFSATMPTAIRRIASDYLQDPQHITVTQKTVTATSIRQRVWMISGASKLDGLTR
ILEVEDFDGLIIFARTKIATTELADKLQARGFAAAALNGDMAQSAREQVISQLKKGRLDI
VVATDVAARGLDVDRITHVVNYDIPQDPEAYVHRIGRTGRAGRKGEAILFAANREQRLLR
MIERTTGQPIELMRLPTASDVADAKAEKIRDQIAIGLKRKGLDTAKEFVFHLADQLEVSA
SDIAAVLAMELGYAQKRAQPEVLDSDSREPYSDRRGDRPERSQKRKPAGNKPKGKAKPKK
RDNAKAPAKPRRSPKAAEQDGARKPRKRKANSSSF
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatacaccggcaaaggcgacctttgcctctttgaacttgcccgcttatttgcaa
aaagccttagacgacgtaggctacgaagtaccctccgatatccagactaaaacaatccca
cccctgctagagggttgcgatgtgatcggtcaggcgcaaacgggtaccgggaagacggcg
gcgtttgcgctgcctattttggctaagatcgattgccgtaaaaagcaaacgcaatgctta
gtcctagccccaacccgcgagctcgctattcaggttgccgaagcctttcagagctacgcg
cggcatttgcctgggtttcaagtggcacccatttatggtggaaccgactaccgcacccag
ttgaaacagctagagcgcggcgcgcaggttattgtaggtaccccggggcgtgttatggac
cacatgcgcaagggcagcctcaaactcgataacttggcacatttggtgctggacgaggcc
gatgaaatgttgcgcatgggctttattgacgacgttgagtgggtcatgtcgcagctgcct
gagaaacgtcagattgctttgttttcggccacaatgccaacggctatccgccgtattgcc
agcgattatctgcaagacccccagcatattacagtgacgcaaaagactgtaaccgcgacc
tcaattcgtcagcgcgtatggatgatttcgggcgcgagtaagctcgatggcttgacccgt
atcttagaagttgaagactttgacggcctaattatttttgcgcgtactaaaatcgcgacg
accgaactggccgataagctacaggctcgtggttttgccgccgcggccttaaatggcgat
atggcgcagagtgcgcgcgaacaagtgatcagccagcttaagaaaggccgcttggatatc
gtggtcgccaccgatgtggcggctcggggcttagatgttgatcgcatcacccacgtagtc
aactatgacataccccaagaccccgaagcctacgtgcaccgtattggacgaaccggtcgc
gctggccgcaagggcgaggctattttatttgcggcgaatcgggagcagcgtctgttgcgt
atgattgaacgcaccacaggccagccgatcgagctcatgcgcttgccaacagcctcggac
gtcgctgatgctaaagcggaaaaaattcgcgatcaaatagcgattgggctgaagcgtaaa
ggcttggatacggccaaggaatttgtatttcatttggcagatcagctggaagtgagcgca
tcagacattgcggcagtactcgctatggagttaggttacgcgcaaaaacgtgctcagccg
gaagtgcttgatagcgatagtcgtgagccgtattcagatcggcgtggagatcgccccgag
cgttctcaaaagcgtaaaccggcgggcaacaagcccaaaggcaaagctaagccgaaaaag
cgtgataacgcgaaagcgcccgcgaaaccgcgaagatcgcccaaagcagctgagcaagat
ggcgctcgtaagccgcgcaaacgtaaggctaactccagcagcttctag
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