Ammonicoccus fulvus: AADG42_11630
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Entry
AADG42_11630 CDS
T10995
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
afuv Ammonicoccus fulvus
Brite
KEGG Orthology (KO) [BR:
afuv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afuv03019
]
AADG42_11630 (hrpA)
Enzymes [BR:
afuv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AADG42_11630 (hrpA)
Messenger RNA biogenesis [BR:
afuv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AADG42_11630 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_19
AAA_22
WHD_HA2
NACHT
AAA_30
SLFN-g3_helicase
nSTAND_NTPase5
AAA_23
ResIII
nSTAND3
T2SSE
TsaE
FtsK_SpoIIIE
AAA_SelU
Motif
Other DBs
NCBI-ProteinID:
XAN09440
UniProt:
A0ABZ3FW86
LinkDB
All DBs
Position
complement(2445577..2449452)
Genome browser
AA seq
1291 aa
AA seq
DB search
MPAVLSPSPGSTGVIRFDPDLPITARVDDIAAAIADTQVVVVAGETGSGKTTQLPKICLS
LGLRKIAHTQPRRIAARSVAERVAEEMEVELGDEVGYQVRFTRRATRETRLLVMTDGVLL
AEIGHDRDLRRYDCIIIDEAHERSLNIDFLLGYLKQLLTRRPELKVIITSATIDTARFAA
HFDDAPIIEVSGRTYPVEIRYRPIVEDLPTDDDDEDVVTTPVVAELRDQVDAICDAVTEL
RALGPGDILVFLSGEREIRDTAEALEALKLRHTEILPLYARLSAAEQHRVFTGHTGSRIV
LATNVAETSITVPGIRYVIDPGTARISRYSARTKVQRLPIEPVSQASANQRSGRCGRVGP
GVCIRLYSETDFNARPEFTDPEILRTNLASVILQMAHADLGDIGSFPFVEPPDAGQITDG
LRLLTELGALRQQPRGARSGTPGASPRLTKIGHQLSRIPLDPRMARMLVEAEKQDCLREV
MVIVAGLTIQDPRERPSDAQQQADTLHRRFHAAPVAEGEEPTPDHSDFIALLRLWDYLGE
QRMTLSGNAFRRMCRAEHLNFLRIREWQDLIGQLKDITRELQLTRNQQPATPDAIHTAVL
SGLLSHIGLAEIDDKKTLPRQRGQQRRRPGPREYLGARGAKFAINPGSAVAKSQPELVMA
AELVETTRLWARTVAGIEAAWVEKVGEHLLRRTHSEPHWSARTGAVVATETVMLLGVPIV
SGRLVNYSRIDPAAAREIFIRSALVEGDWRTRHHFFARNADVRAQAEELEERARRRDIVV
DDQTIFDFYAARIPADVVSVRHFDAWWRVKRRSDDAFLDLTLDDLTHDAAGPAAGDFPDQ
WEVDGTSLPVSYVFDPGSGADGVSVDLQLARLNQVPPEPFTWQVPGLRHELATELIRSLP
KQVRTRFVPAPDHARDALRWLAEHDTPETVPFPQALGRALRGLTSEIVPEDAWDLTKLDD
HLRVTFVVRDAARGDREVGRGKDLAELRRRFAPQLTEKLTRAAAKPGRTRATDWTFGTLP
EQQKVGGGVGYPGLVDEGTAVSVVVHDNPATRDRAHRLGVRRLVQLNTPDPTKWVVGHLS
NTDKLALGNSPYPSVPELLADARLKAVGDLIPGGEPVRTEAAFRKLCDEVRMELPDRMRM
VVAQTAEILRHHQQVSLALAGVDDAEIADDIIEQRDNLVFKGFLAATGEPWFSQVAKYLH
AIELRLGSRRGNVRRDDDALRTIWPLEREYAELVARLPAGPLPDEVAEVGWQLEELRVSL
FAQSLGTVRPVSAKRVRTALASAGQYIGRHA
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ctgcccgctgtgctgtccccttcgcccgggtcgacaggggtgattcgtttcgacccggac
ctgccgatcaccgcccgggtcgacgacatcgccgcggcgatcgccgacacccaggtggtg
gtggtggccggcgagacgggatcgggcaagaccacgcagctgcccaagatctgcctgtcg
ctcggcctgcggaaaatcgcccacacccagccccggcggatcgccgcgcgatccgtggcc
gagagggtcgccgaggagatggaggtcgagctcggtgacgaggtcggctatcaggtgcgg
ttcacccggcgggccacccgcgagacccggctgttggtgatgacggacggcgtcctcctc
gccgagatcggccacgaccgtgacctgcgccgctatgactgcatcatcatcgacgaggcc
cacgaacgcagcctcaacatcgatttcctgctcggctatctcaaacagttgctgacccga
cgcccggagctcaaggtgatcatcacctcggcgaccatcgacaccgcgcgtttcgcggcc
cacttcgacgatgcgccgatcatcgaggtctcgggccggacctatccggtcgagatccgc
tatcgcccgatcgtcgaagacctgccgaccgatgacgacgacgaggacgtcgtcaccacg
cccgtcgtcgccgagctgcgagaccaggtcgatgccatctgcgacgccgtgaccgagctg
cgggccctcgggccgggggacatcctggtgttcctcagcggcgagcgcgagatccgggac
accgcggaggcgctcgaggcgctcaaactgcgccacaccgagatcctcccgctctatgcc
cgcctctccgctgccgagcaacaccgcgtgttcaccggccacacgggctcacgcatcgtc
ctcgccaccaatgtggccgagacctccatcaccgttccgggcatccgctacgtcatcgac
ccgggcaccgcccgcatctcccgctattcggcccgcaccaaggtccagcgcctgcccatc
gagcccgtctcgcaggccagtgccaaccagcgctcgggccggtgcggccgcgtcgggccg
ggtgtgtgcatccggctctacagcgaaaccgatttcaacgcccgacccgagttcaccgat
cccgagatcctgcgcaccaatctcgcctcggtcatcctccagatggcccacgccgatctg
ggcgatatcgggtccttcccgttcgtcgaacccccggatgccggccagatcaccgacggc
ctgcgcctgctcaccgagctgggtgcgctgcggcagcagcccaggggtgcccgttcgggt
acgccgggcgccagcccccgactgacgaagatcggtcaccagttgtcgcgcatcccgctc
gacccccggatggcccgcatgctcgtcgaggcggagaagcaggactgcctgcgcgaggtc
atggtgatcgtggccggactgacgatccaggacccgcgcgaacggccgtcggatgcccag
caacaggccgacaccctgcatcgccgcttccatgccgcaccggtggccgaaggggaggaa
ccgactccggaccattccgacttcatcgccctcctgcggctctgggactatctgggtgag
cagcgcatgacgctcagcggcaacgcattccggcgcatgtgccgggccgaacacctcaac
ttcctccgcatccgcgaatggcaggacctgatcggccagctcaaggacatcacccgcgag
ctccagctcacccgcaaccagcagcccgccacacccgatgccatccacaccgccgtgctg
tccggcctgctgtcccacatcggcctcgccgagatcgacgacaagaagaccctgccccgc
cagcgcggccagcagcgtcgacgccccggtccccgcgaatacctgggagcgcggggcgcg
aagttcgccatcaatccgggttccgccgtcgccaagtcccagcccgaactcgtcatggcg
gccgaactggtcgagaccacccgcctctgggcccgcacggtggccgggatcgaggcggcc
tgggtcgagaaggtgggggagcacctgctgcggcgtacgcattcggaaccgcactggtcc
gcccgcaccggcgcggtggtggcgaccgagaccgtcatgctcctgggggtgccgatcgtc
tcgggacggctggtcaactattcgcgcatcgacccggcagcggcccgcgagatcttcatc
cggtcggcgttggtcgagggggactggcgtacgcggcatcacttcttcgcccgcaatgcc
gacgtgcgcgcccaagccgaggagctcgaggagcgggcccggcgccgcgacatcgtggtg
gatgaccagacgatcttcgacttctatgcggccaggatcccggccgatgtcgtgtccgtg
cgtcacttcgatgcgtggtggcgggtcaagcggcgcagcgacgatgcgttcctcgacctc
acgctcgacgacctgacccacgacgccgccggtccggccgccggtgactttcccgaccag
tgggaggtcgacggcacgagcctgccggtcagctacgtcttcgacccgggatcgggggcc
gacggggtcagcgtcgacctgcagctcgcccgcctcaaccaggtgccgcccgaaccgttc
acctggcaggtgcccggtcttcggcacgaactggccaccgagctgatccgcagcctgccc
aagcaggtccgcacccggttcgtcccggcccccgaccacgcccgcgatgcgttgcggtgg
ctggcggagcatgacacccccgagactgtccccttcccccaggcgctcggtcgggccctg
cgcggcctgaccagcgagatcgttcccgaggacgcctgggacctgaccaagctcgacgac
catctgcgcgtcaccttcgtcgtccgcgatgcggcccgcggcgaccgcgaggtcggtcgc
ggcaaggacctcgccgaactgaggcgccgtttcgcgccccagctcaccgagaagctgacg
cgcgcggccgcgaaaccggggcgtacgcgcgcgacggactggaccttcggcaccctcccg
gagcagcagaaggtcggcgggggcgtcggctatccgggtctcgtcgacgagggcacggcc
gtgagcgtggtcgtccatgacaatcccgcgacccgtgatcgcgcgcatcgcctgggcgta
cgccggctcgtccagctcaacacacccgatcccaccaagtgggtcgtcggccacctgtcc
aacacagacaagctggcgctggggaacagcccctatccgagcgtgcccgagctgctggcc
gatgcccgcctcaaggccgtcggtgacctgatccccggtggggagccggtgcgcaccgag
gcggccttccggaagctctgcgacgaggtgcgcatggagctgcccgaccggatgcggatg
gtcgtggcccagaccgcggagatcctgcggcaccaccagcaggtcagcctcgccctggcc
ggcgtcgacgatgccgagatcgccgacgacatcattgagcagcgcgacaacctggtcttc
aagggcttcctggcggccaccggggagccctggttctcgcaggtcgccaaatatctccat
gcgatcgagctcaggctcggctcccggcgcggcaacgtgcggcgcgacgacgatgcgctg
cgcacgatctggcccctggagcgcgagtacgccgagttggtcgcccgcctgccggccggc
ccgctgcccgacgaggtggccgaggtcggctggcagctggaggagttgcgggtcagcctc
ttcgcgcagagcctcggcacggtgcggccggtgtcggcgaaacgtgtgcggacggcgctg
gcttcggcgggccagtacattggtcgccatgcttga
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