Aspergillus flavus: AFLA_007211
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Entry
AFLA_007211 CDS
T01090
Name
(GenBank) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
afv
Aspergillus flavus
Pathway
afv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFLA_007211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afv03019
]
AFLA_007211
03041 Spliceosome [BR:
afv03041
]
AFLA_007211
03009 Ribosome biogenesis [BR:
afv03009
]
AFLA_007211
03016 Transfer RNA biogenesis [BR:
afv03016
]
AFLA_007211
Enzymes [BR:
afv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AFLA_007211
Messenger RNA biogenesis [BR:
afv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
AFLA_007211
Spliceosome [BR:
afv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AFLA_007211
Complex C
U4/U6.U5 tri-SnRNP related factors
AFLA_007211
Ribosome biogenesis [BR:
afv03009
]
Eukaryotic type
Pre-60S particles
Helicases
AFLA_007211
Transfer RNA biogenesis [BR:
afv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
AFLA_007211
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
VasI
Motif
Other DBs
NCBI-ProteinID:
KAF7618314
LinkDB
All DBs
AA seq
1080 aa
AA seq
DB search
MDELFDVFEDQPQAVKPSDGAPKRPKKDKSKKRQVNGDVKESGATVEAKEPVAVVDTPVE
ETSEPEEGDAPTTDNNEQPDAKRPRLEKEPEPVVADLFETAQEREVAGSAGLQAANDSAS
VVLSHQIRHQVAIPPNYPYVPISEHKPPENPARVWPFTLDPFQQVSIASIQREESVLVSA
HTSAGKTVVAEYAIAQSLKNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINPT
ATCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDATRGVVWEETIILLPDKVRYVF
LSATIPNAMQFAEWIVKMHNQPCHVVYTDYRPTPLQHYFFPAGADGIHLVVDEKGVFREE
NFQKAMSTIADKKGDDPADAMAKRKGKGKDKKLNKGGNKGPSDIYKIVKMIMIKNYNPVI
VFSFSKRECESGALQMSNLAFNDDSEKEMVSKVFNSAIEMLSEEDRNLPQIQNILPLLRR
GIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGFSQR
WVTPSEFIQMSGRAGRRGLDDRGIVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYNMI
LNLMRVEGISPEFMLERCFYQFQNTAGVATLEKELAELEEKRANMTISDEGTIREYYDLR
KQIRQFTDDMQAVISHPNYCLPFIQPGRLISIKHKDVDFGWGVVVNYKQRKAPKNSTEEP
TPYQKYVVDVLLRIADGPSVGTKTFEDLPSGVRPPKEGENSRMEVVPVVLSCLQSISHIR
IFLPKDLHSADSRNGVKKALDEVQKRFPDGIAVLDPIENMNIKDDNFKKLLRKIEVLESR
LLSNPLHNSPRLPELYEQYSDKVETGSKIKATKKKISEAMSIMQLDELKCRKRVLRRFGF
INEAEVVQLKARVACEISTGDELMLSELLFNGFFNNLTPEQVASVLSVFVFEEKSKETPA
LTRDELAKPLKEIQAQARIVAKVSQESKLAVNEEEYVQSFHWELMEVIYEWANGKSFVDI
CKMTDVYEGSLIRVFRRLEECLRQMAQASKVMGSEELESKFETALTKVRRDIVAAQSLYL
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacttttcgatgtttttgaggaccagccccaggctgttaagccctctgatgga
gctcccaaacgtcccaagaaagacaagagcaagaagcgtcaggtcaatggggatgtgaag
gaaagcggtgctaccgtagaagcaaaggaacctgtcgccgttgtcgatacccccgttgaa
gagacttccgagccagaggagggcgacgcgcccacgacagacaacaatgaacaaccggat
gcgaaacggccgcgactcgagaaggaaccggaacctgtggtagccgacttgttcgagaca
gcgcaagagcgtgaagtcgccggatctgcaggacttcaagccgccaatgattcggcatcc
gttgtgctatcgcaccaaatccgccatcaggtcgcgatcccgccgaactatccatacgtg
cccatctccgagcataaacctcccgagaacccggcacgagtatggccgttcaccctcgat
ccgttccagcaggtttccatcgcatcaatacaaagagaggagagtgtgctagtttcagcc
cacactagtgccggaaagaccgtcgtcgccgaatatgctattgcccagagcttgaagaac
aaccagagagttatctatacaagtccgatcaaggcccttagcaaccagaaataccgagaa
tttgcagcagagtttggagatgttggtctaatgacgggtgatgttaccatcaatccaacg
gctacttgtctggttatgacaacggagattttgcggtctatgctgtaccgtggctccgag
attatgcgtgaagtcgcctgggttgtcttcgatgaaatccattatatgcgcgatgcgacc
cgaggtgtggtttgggaggaaaccattattctgcttccagataaggttcgctatgtgttc
ttgtctgccacaatccccaatgccatgcaattcgccgaatggatcgtgaagatgcacaat
caaccttgccacgttgtttataccgattacagaccgacacccttacaacattatttcttc
cctgctggtgccgatggaattcacctggttgtagacgagaagggcgtgttccgcgaagaa
aacttccagaaggctatgagtactattgcggacaaaaagggcgatgacccagcggatgct
atggccaagaggaaaggaaaaggcaaagataagaagttgaataaaggtggaaataagggc
ccaagcgacatctataagattgtcaagatgatcatgatcaaaaactacaaccctgtgatt
gtcttcagtttcagcaagcgtgaatgcgagtcaggtgctctgcagatgagcaacttggcc
tttaatgacgactctgagaaggaaatggtttccaaggtttttaacagtgcgattgaaatg
ctctcggaagaggacaggaacctcccccagattcaaaacattctacctctcttgcgcaga
ggtatcggtgtccaccactctggtctccttcccattttgaaagagaccattgaaattctc
ttccaagaaggtctcatcaaagttcttttcgctactgaaacattctccatcggtcttaac
atgcccgcgaaaaccgttgttttcacaagcgttcgcaaattcgacggtttcagtcagcgc
tgggtcaccccgtcagaatttattcagatgtccggtcgtgctggtcgaagaggtctcgat
gaccgaggtattgttattatgatggttggtgaagagatggatcccgctgtagccaaggag
attgttcgtggtgaacaagaccgactgaattcggcgttccatctgggctacaacatgatt
ctgaacctcatgcgtgtagagggtatctcacctgagttcatgttggaaagatgtttctac
cagttccaaaataccgccggcgttgccactcttgaaaaagagcttgctgagttggaggag
aagagggccaacatgactatttctgacgaaggaaccattcgtgaatactacgatttgagg
aaacagatccgccaattcaccgatgacatgcaggcggttataagccatcccaattactgc
ctacccttcatccagcctggacgcttgatcagcatcaagcacaaggatgtggatttcgga
tggggtgtcgttgtcaactacaagcaacgcaaggccccgaagaattcgaccgaagaacct
acgccgtaccagaaatatgttgttgacgttttgctgaggatcgccgacgggccgtcggtc
ggcactaagacctttgaagatttgccgtccggcgtcaggccgccaaaggagggcgaaaac
tcccgtatggaggtggtgccggtagttctcagctgtctccaatctatctctcacattcga
attttcctcccgaaggatttacattcggcggattcaaggaatggggtgaagaaggctctg
gatgaggtgcaaaaacgcttcccagatggcattgctgtgcttgatccgattgagaacatg
aacatcaaggatgacaacttcaagaagctgcttaggaaaattgaagtgcttgaatctcgt
ctcctctctaacccattgcacaactcgccacgtctgccggaactttatgaacagtactcg
gacaaggttgaaactggatccaagatcaaggccaccaaaaagaagatctccgaggctatg
tcgatcatgcagcttgacgagctaaagtgccgtaaacgagtgcttcgtcggtttggattc
atcaacgaagccgaggtcgtgcagttgaaagcccgtgtggcctgtgaaattagcacgggt
gacgaattgatgctcagcgaattgcttttcaacggtttcttcaataaccttacacctgaa
caagtcgcttcggtgctgagtgtgttcgttttcgaagagaagtccaaggagacccctgcc
ctaacacgggacgagttggcgaagcccctcaaggaaatccaggcgcaagcccgaattgtt
gccaaggtttctcaggagtcaaagctcgctgtcaatgaagaggagtatgtgcagagcttc
cattgggagttgatggaggttatatatgagtgggcgaatggcaagtccttcgttgatatc
tgtaaaatgacggatgtttacgaaggcagtttgatccgagtcttccgccgattggaagaa
tgtttacgacagatggcacaggcctccaaggtcatgggaagcgaggaacttgagagtaaa
tttgagaccgccttaaccaaggtccgcagggacattgttgccgcccagtccttgtatcta
tag
DBGET
integrated database retrieval system
