Anaeromyxobacter sp. Fw109-5: Anae109_0986
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Entry
Anae109_0986 CDS
T00559
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
afw
Anaeromyxobacter sp. Fw109-5
Brite
KEGG Orthology (KO) [BR:
afw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afw03016
]
Anae109_0986
Enzymes [BR:
afw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Anae109_0986
Transfer RNA biogenesis [BR:
afw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Anae109_0986
Prokaryotic type
tRNA splicing ligases
Anae109_0986
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF2120
Ribosomal_L11_N
Motif
Other DBs
NCBI-ProteinID:
ABS25195
LinkDB
All DBs
Position
complement(1120372..1121811)
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AA seq
479 aa
AA seq
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MQLRRIEGDLWEIPREGRMRVPGRVYSAGPPAPDDPALQQVANVAHLPGILRFSLAMPDI
HWGYGFPIGGVAAMDVERGAVSPGGVGYDINCGVRVLTTALEEEDVRARLHAVTAQLFRD
VPTGVGASRAIPTLSDRELDEVLEGGARWAVRRGFAAASDDAERCEEGGRLAGADASAVS
ARARARGADQLGTLGSGNHFLEVDRVAEVYDPQAAEAFGLVPGRVALQIHSGSRGLGYQV
CDEFVAEIARRRPEFGPDYADLPDPQLAAAPIGSALGQRYLGAMQAAANFAWANRQVMTG
LAVRALLHVLRISERDLGARVLYDVCHNVAKLEEHDIEGARRRVLVHRKGATRCFGPGDA
RVPEPYRGVGQPVLIPGDMGRYSYVLAGTERAMRDTFGSSCHGAGRLLSRGEALRRGRGR
SIAAELAARGIEVISRGKKTLAEEMSDAYKDVAQVVAVMDAAGISRLVARLEPMGVIKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcagctacggcggatcgagggcgatctgtgggagatcccgcgcgaggggcggatgcgc
gtgccgggccgggtgtacagcgcggggccgcccgcgcccgacgaccccgcgctccagcag
gtcgcgaacgtggcgcacctccccggcatcctccgcttctccctggcgatgccggacatc
cactgggggtacgggttccccatcggcggcgtcgcggcgatggacgtcgagcgcggcgcg
gtctcgcccggcggcgtcggctacgacatcaactgcggcgtgcgcgtcctcaccaccgcg
ctcgaggaggaggacgtccgggcgaggctgcacgccgtcaccgcccagctcttccgcgac
gtccccaccggcgtgggggcgagccgggcgatccccaccctgtcggaccgcgagctggac
gaggtgctggagggaggcgcgcgctgggcggtgcggcgcggcttcgccgccgcgagcgac
gacgcggagcgctgcgaggagggcgggcggctcgccggcgccgacgcgtccgcggtgagc
gcgcgggcgagggcgcgcggggcggaccagctcggcaccctcgggagcggcaaccacttc
ctggaggtggaccgggtggccgaggtctacgatccgcaggccgcggaggcgttcgggctc
gtgccgggccgcgtcgcgctccagatccactccggctcgcgcgggctcggctaccaggtg
tgtgacgagttcgtcgcggagatcgcgcggcgccgccccgagttcggccccgactacgcg
gacctgcccgacccgcagctcgccgcggcgcccatcgggagcgcgctcggccagcgctac
ctcggcgcgatgcaggcggcggccaacttcgcgtgggccaaccggcaggtcatgaccggc
ctcgccgtccgggccctcctccacgtcctgcggatctccgagcgcgacctcggcgcgcgg
gtcctctacgacgtctgccacaacgtggcgaagctcgaggagcacgacatcgagggcgcg
cgccggcgcgtgctcgtccatcgcaagggggccacgcgctgcttcgggcccggcgacgcc
cgcgtccccgagccctaccgcggcgtgggccagcccgtgctcatcccaggcgacatgggg
cgctactcgtacgtgctcgccggcaccgagcgcgcgatgagggacacgttcggcagctcc
tgccacggagccggccggctgctctcccgcggggaggcgctgcggcgcggccgcggccgc
tccatcgcggccgagctggctgcgcgcgggatcgaggtcatctcgcgcgggaagaagacg
ctcgccgaggagatgagcgacgcctacaaggacgtcgcgcaggtggtcgcggtgatggac
gcggcagggatctcccgcctcgtcgcccgcctggagccgatgggggtcatcaagggctga
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