Anaeromyxobacter sp. Fw109-5: Anae109_1447
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Entry
Anae109_1447 CDS
T00559
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
afw
Anaeromyxobacter sp. Fw109-5
Pathway
afw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Anae109_1447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afw03019
]
Anae109_1447
03016 Transfer RNA biogenesis [BR:
afw03016
]
Anae109_1447
Enzymes [BR:
afw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Anae109_1447
Messenger RNA biogenesis [BR:
afw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Anae109_1447
Transfer RNA biogenesis [BR:
afw03016
]
Prokaryotic type
tRNA degradation factors
Anae109_1447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
GntR
Motif
Other DBs
NCBI-ProteinID:
ABS25654
UniProt:
A7HAA8
LinkDB
All DBs
Position
1640221..1642953
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AA seq
910 aa
AA seq
DB search
MGHEGQERRRTALVEELRRAAGKPLSIRELMQRARIHPGERTDVKRALRDLTREGVLLRD
GKRFSLPGARPAAAPAAALAPVGERRGMRRAGRGNEVVGTLKKHRDGYGFVARIDRKGDD
VFVPPGEAAQALDGDLVRVEIVPARGGRTAGRLVEVIERRRRLLIGTYHARGARSFVVPA
DEELGEAVPVPETAAAQDGDVVKVALEPGTARLQGAVVEAIGRPGEPRVEVLKVAYAKGF
ADVFPEPVRAEAEATPDRVRPEDRQGRRDLTALPLVTIDGEDARDFDDAVHVERLEGRKG
LYRLVVAIADVAHYVRPGAALDAEAGRRGTSVYFPMQVLPMLPERLSNGICSLNPDVDRL
CMVADLVVDEHGETRSAEVYEGVMRSAARCTYTEVANVVAGQSVPGRDRFRERFLLMAEL
QEKLTAMRGRRGALDFDLPEAKIVLGEGGEVVAIEKRPRNRAHRIVEEFMLAANEAVARW
FGSRELPTIYRIHDVPDEEKLQAFLDLAESHGFEVPEVPGPRALNALLGRFQGHAQQRAL
NQLLLRAMMQAVYATENIGHYGLAAQHYLHFTSPIRRYPDLVVHRLLKEEWARRQGQPVR
EPSPAALAEMAAVSSERERAAMEAERDIAAFYAALFMKDKVGERYEGVISAVVEFGLFVE
LKRWFVEGLVRLEDLGGAPELDTELHALVDRTTGRAFRVGDEVTVDVVSASPIRRRIELK
LVEEAKAIGKPAAKGRRRREAEPVLAEAGPEEADARGARAPRRGKPAPASAPPAAGRRQR
SGEGHREHGVKQGPRARTGGGREQQGERRGRGGEGRGRGGEGRGRGGGEGRGRGGEARGR
RGEGRGRGGEARGRGGEARGRGPSERAGGAPGKVGSRRGPPGRKGGAGKGAAKPSKGAKG
RGGGRRRRGR
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggggcacgaaggccaggagcggcggcgcacggcgctcgtcgaggagctgcgtcgcgcg
gcgggaaagccgctctccatccgggagctcatgcagcgggcgaggatccaccccggcgag
cggacggacgtgaagcgggcgctgcgcgacctcacgcgcgagggcgtcctgctccgcgac
gggaagcgcttctcgctgcccggcgcacgccccgcggccgcgccggcggccgcgctcgcc
cccgtgggcgagcggcgcgggatgcgccgggccggccgcggcaacgaggtggtgggcacc
ctcaagaagcaccgggacggctacgggttcgtcgccaggatcgaccgcaagggcgacgac
gtgttcgtcccgcccggcgaggcggcccaggcgctggacggcgacctcgtgcgggtcgag
atcgtccccgcgcgcggcgggcgcaccgccgggcggctcgtcgaggtgatcgagcggcgc
cggcgcctgctcatcggcacctaccacgcccggggcgcgcgcagcttcgtcgtcccggcg
gacgaggagctgggcgaggcggtgccggtgccggagaccgcggcggcgcaggacggagac
gtcgtgaaggtcgcgctcgagcccgggacggcgcggctgcagggcgcggtggtggaggcc
atcgggcgtcccggcgagccgcgcgtcgaggtgctgaaggtcgcctacgcgaagggcttc
gccgacgtgtttccggagcccgtccgcgccgaggcggaggcgacgccggatcgggtccgc
cccgaggatcgccagggccggcgcgatctcaccgccctcccgctcgtcaccatcgacggc
gaggacgcgcgcgacttcgacgacgccgttcacgtcgagcgcctcgagggccggaagggg
ctctaccggctggtcgtcgccatcgccgacgtggcgcactacgtgcgacccggcgcggcg
ctcgacgccgaggcggggcggcgcgggacgagcgtgtacttcccgatgcaggtgctgccg
atgctgccggagcggctctcgaacggcatctgctcgctcaaccccgacgtggaccgcctg
tgcatggtggcggacctcgtggtggacgagcacggcgagacccgctcggccgaggtgtac
gagggcgtgatgcggagcgccgcgcgctgcacgtacaccgaggtggcgaacgtcgtcgcg
ggccagtcggtccccggccgcgatcgcttccgggagcggttcctgctcatggcggagctg
caggagaagctcaccgcgatgcgcggccgccgcggcgccctggacttcgacctgcccgag
gcgaagatcgtgctcggcgagggcggcgaggtcgtcgccatcgagaagcgcccccgcaac
cgcgcgcaccggatcgtcgaggagttcatgctcgcggcgaacgaggccgtcgcgcgctgg
ttcggctcgcgcgagctgcccaccatctaccggatccacgacgtgccggacgaggagaag
ctccaggccttcctggacctcgccgagtcgcacggcttcgaggtgccggaggtgccgggc
ccgcgcgcgctgaacgcgctcctcgggcggttccagggccacgcgcagcagcgcgcgctg
aaccagctcctgctgcgcgcgatgatgcaggcggtctacgccaccgagaacatcggccac
tacgggctcgccgcccagcactacctgcacttcacctcgcccatccgccgctacccggac
ctcgtcgtgcaccggctcctgaaggaggagtgggcgcggcggcaggggcagccggtgcgc
gagccgtcgcccgcggccctggcggagatggcggcggtctcctcggagcgcgagcgcgcg
gcgatggaggcggagcgggacatcgccgccttctacgcggcgctgttcatgaaagacaag
gtcggcgagcgctacgagggcgtgatctctgccgtcgtcgagttcgggctgttcgtcgag
ctgaagcgctggttcgtggaggggctcgtgcgcctcgaggacctcgggggcgcgccggag
ctcgacaccgagctgcacgcgctcgtggatcgcaccacgggtcgcgccttccgcgtgggc
gacgaggtcaccgtcgacgtggtctccgcgagcccgatccgccgccgcatcgagctgaag
ctcgtcgaggaggcgaaggccatcgggaagcccgcggcgaagggtcggcggcggcgcgag
gcggagccggtcctcgcagaggcggggccggaggaggccgatgcccggggagcccgcgcc
ccgcgacgcgggaagcccgccccggcgagcgcgccgccagcggccggtcgccggcagcgc
agcggcgaggggcatcgcgagcacggggtgaagcagggaccgcgggcgcgcaccggcgga
gggcgggagcagcagggcgagcggcgtggccggggaggagaggggcgcggccgcggaggt
gaggggcgcggtcgcggaggaggagaggggcgcggtcggggaggagaggcgcgcggtcgc
cgaggtgaggggcgcggtcggggaggagaggcgcgcggtcggggaggagaggcgcgcggt
cgggggccgtccgagcgagccgggggtgcgccgggcaaggtcggctcgcgccgcggtcct
cccggcaggaagggtggagccgggaagggggccgcgaagccgtccaagggtgccaagggc
cggggcggcgggcggcgccggcgggggcggtag
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