Acidihalobacter ferrooxydans: BW247_06305
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Entry
BW247_06305 CDS
T09791
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
afy
Acidihalobacter ferrooxydans
Brite
KEGG Orthology (KO) [BR:
afy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afy03019
]
BW247_06305
Enzymes [BR:
afy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BW247_06305
Messenger RNA biogenesis [BR:
afy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BW247_06305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
NACHT
T2SSE
SLFN-g3_helicase
AAA_30
Motif
Other DBs
NCBI-ProteinID:
APZ42753
UniProt:
A0A1P8UFX4
LinkDB
All DBs
Position
1328243..1332133
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AA seq
1296 aa
AA seq
DB search
MQDSELLQQLQSRLDGVRPRERVEFARRLAGLERRVRGGQPIDRGLAKLAPEIEAACERV
AARRAALPVPEYPDELPVVARREDIARAIADNQVVIVCGDTGSGKTTQLPKICLELGRGV
AGLIGHTQPRRIAARSVAARIAEELKTEVGRGVGFKVRFSDHVSPESYLKLMTDGILLAE
MQQDRMLTQYDTLIIDEAHERSLNIDFLLGYLKRLLPQRPDLKLIITSATIDPERFSRHF
GDAPILMVEGRTYPVEVRYRPLVTLEDDDEDRSQTDGIVEACAELAREGLGDVLVFLPGE
REIREAAEALRKHHPPHTEILPLYARLSAAEQHRVFEGHAGRRIVLATNVAETSLTVPGI
RYVVDTGTARISRYSWRAKLQRLPIEPISQASADQRKGRCGRVGPGVCIRLYSEEDFASR
PAFTDPEIQRTNLAAVVLQMGALGLGEVADFPFIDPPDPRLIKDGYLLLEELHAVDAHNR
LTDIGRRLARLPVDPRLGRMLLAAEREGALREALVIVSALAVQDPRERPADRQQAADEAH
KRFHDERSDFLAYLKLWEHYHEQARHHSKSQLRKLCQREFLSWMRMREWRETWRQLHGQL
AEMGFRENQQPAEYEAIHRSLLTGLLAHVGFKSEDERDKHAYLGARNRKFHIFPGSGLHK
RGPKWLMAAEITETARTYARTVARIKPEWIEQLGAHLLKHHIFEPHWEQRPARVGAFDKL
TLYGLVVQPRKRVDYARTHPAEARELFIRHALVYGEFRSRGGFLAHNRALIEEVEELEAK
ARRPDILVDEHVLFEFYDRLVPAHINNGKAFERWREQAERENAQLLYLTRDALMQHGAGE
ITADRFPDQFVAGPGLSLPLRYRLEPGGEDDGVTLTVPLAALRQVEVARCEWLVPGLLEE
KLTALIRGLPKALRKNFVPAPDFARACAQALAFGEGEMFEALAHQLKRMTGVDVPADALD
RDALPEHLRMRFEVIDSKGKLLAAGRDLSALADTLEGRVQQTFEALPTQSLERDDVAAWD
FGDLPESVDIEQHGLALKGYPALVREGEKVALRVLDSAASAEHAHREGVLGLLHIVLRER
VKYLHKRLPHAQTMCLHFAAVGRCEALKDDLIDAVLEDLFLAGPLPRSEAEFAARVEAGR
SEIVTAATQLAERMNDALATFHRIRQSLKGNVPLSWIEAAADVNDQLTHLVYPGFVRATP
AAYRQHLPRYLKAIERRLERLQQQPDKDRRLRVEIEPLWARCKQRWGDGRNVGEALRDYR
WQIEELRVSLFAQELGTPRPVSVARLEKQWKEMGSV
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggactccgaacttctccaacagctgcaaagccgcctcgacggggtgcgtccgcgc
gagcgcgtcgagttcgccaggcgtctggcgggtctggagcgtcgcgtgcgcggcgggcag
ccgatcgaccgtgggctggcgaaactggcacccgagatcgaagccgcctgcgagcgcgtg
gcggcgcggcgggccgcgctgccggtgccggagtatcccgacgagttgccggtggtcgcg
cggcgcgaggacattgcccgcgccatcgccgacaaccaagtcgtcatcgtctgcggcgac
accggctcgggcaagaccacccagctgcccaagatctgcctggagctggggcgcggcgtc
gccgggctgatcggccacacccagccgcggcgcatcgccgcgcgcagcgtcgccgcgcgc
atcgccgaggaactcaagaccgaagtcgggcgcggggtcggcttcaaggtgcgcttctcg
gaccacgtcagccccgagagctacttgaagctcatgaccgacggcatcctgctcgccgag
atgcagcaggaccgcatgcttacccagtacgacacgctgatcatcgacgaggcccacgag
cgcagcctcaacatcgatttcctgctcggctacctcaagcgcctgctgccgcagcggccc
gacctcaagctcatcattacctcggcgaccatcgacccggagcgcttctcgcgccacttc
ggcgacgcgcccattctcatggttgagggccgcacttatcccgtcgaggtgcgctaccgt
ccgctggtaacgctggaggacgacgacgaggaccgcagccagaccgacggcatcgtcgag
gcctgcgccgagctggcgcgcgagggcctgggcgacgtgctggtgttcctgcccggcgag
cgcgaaatccgcgaggccgccgaggcgctgcgcaagcaccatccgccgcacaccgaaatc
ctgccgctgtacgcgcggctgtccgccgccgagcagcatcgcgtgttcgagggccatgcc
gggcggcgcatcgtgctcgccaccaacgtcgccgaaacctcgctcaccgtgcctggcatc
cgctacgtggttgataccggcaccgcgcgcatctcgcgctactcctggcgcgccaaactg
cagcgcctgccgatcgagccgatttcgcaggcctcggccgaccagcgcaagggccgctgc
gggcgcgtcgggccgggcgtgtgcattcgcctctacagcgaggaggatttcgcctcgcgt
cccgcgttcaccgatcccgagatccagcgcaccaacctcgccgccgtggtgctgcagatg
ggcgcgctgggcctgggcgaggtcgccgacttcccgttcatcgacccgcccgatccgcgg
ttgatcaaggacggctacctgctgctcgaagagctgcacgcggtcgatgcgcacaaccgc
ctcaccgacatcggccggcgcctggcacggctgccggtcgatccgcgcctgggccgcatg
ctgctcgccgccgagcgcgagggcgcgctgcgcgaggcgctggtcatcgtctccgcgctg
gccgtgcaggatccgcgcgaacgccccgccgaccggcaacaggccgccgacgaggcacac
aagcgcttccacgacgaacgctccgacttcctcgcctacctcaagctctgggagcactac
catgagcaggccaggcaccactccaagtcgcagctgcgcaagctctgtcagcgcgagttc
ctgtcgtggatgcgcatgcgcgagtggcgcgagacctggcgccagttgcacggtcagctc
gccgagatgggctttcgcgagaaccagcagcccgccgagtacgaggccatccaccgttcg
ctgctcaccgggctgcttgcgcacgtcggcttcaagtccgaggacgagcgcgacaaacac
gcctatcttggcgcgcgcaatcgcaagttccacatttttcccggctccggcctgcacaag
cgcggccccaagtggctgatggccgcggagatcaccgagaccgcgcgcacctacgcccgc
accgtcgcgcgcatcaagccggaatggatcgaacagctcggcgcgcacctgctcaagcac
cacatcttcgagccgcactgggaacagcgccccgcgcgcgtcggcgccttcgacaagctc
acgctctacggactcgtcgtgcagccgcgcaagcgcgtcgactacgcgcgcacccaccct
gcggaggcgcgcgaactcttcattcgtcatgccctggtctacggcgagttccgcagccgt
ggcggttttctcgcgcacaaccgcgcgctgattgaggaagtcgaggagctggaggccaag
gcccgccggcccgacatcctggtcgacgaacacgtgctgttcgagttctacgaccgcctc
gtcccggcccacatcaacaacggcaaggctttcgagcgctggcgcgagcaggccgagcgt
gaaaacgctcaattgctgtacctgacgcgcgacgcgttgatgcagcacggcgctggcgag
atcaccgccgaccgtttccccgaccagttcgtcgctggccccggcctgtcgctgccgctg
cgctaccgtctggagccgggcggcgaggacgacggcgtgacgctcaccgtgccgctcgcc
gcgctcaggcaggtcgaggtcgcgcgctgcgaatggctggtgcccggcctgctggaggaa
aagctcaccgcgctgattcgcggcctgcccaaggcactgcgcaagaacttcgtgcccgcg
ccggacttcgcccgcgcctgcgcgcaggcgctcgccttcggcgaaggcgagatgttcgag
gcgctcgcgcaccaactcaaacgcatgaccggcgtggacgtgcctgcggacgccttggac
cgcgacgcgctacccgagcacctacgcatgcgtttcgaggtcatcgacagcaagggtaag
ctgctcgccgccgggcgcgacctgtccgcgctggccgacacgctggaaggtcgcgtgcag
cagaccttcgaggcgttgcccacgcagagcctggagcgcgacgacgtcgccgcctgggat
ttcggcgacctgcccgagagcgtcgacatcgagcagcacggtctcgcgctcaagggctat
ccggcgctggtgcgcgaaggggagaaggtcgccctgcgcgtgctggacagcgccgccagc
gccgagcatgcgcaccgcgagggcgtgctcggcctgctgcacatcgtgttgcgcgagcgg
gtcaaatacctgcacaagcgcctgccgcatgcgcagaccatgtgcctgcacttcgccgcg
gtcgggcgctgcgaagcgctcaaggacgatctcatcgacgccgtgctggaagacctgttc
ctcgccgggccgctgccgcgcagcgaggccgagttcgccgcgcgcgtcgaggccgggcgt
agcgagatcgtcaccgctgctacgcaactcgccgagcgcatgaacgacgcgctcgccacc
ttccaccgcatccgccagagcctcaagggcaacgtgccgctgagctggatcgaggccgcc
gcggacgtcaacgaccagctcacgcacctcgtctatcccggcttcgtccgcgccacgcct
gcggcgtatcgccagcacctgccgcgctatctcaaggccatcgagcggcgcctcgaacgc
ctgcagcagcagcccgacaaggaccgccgcctgcgcgtggagatcgagccgttatgggca
cgctgcaagcagcgctggggcgatggacgcaacgtcggcgaggcgctgcgggactaccgt
tggcagatcgaggaactgcgcgtttcactgttcgcacaggaactcggcacaccgcggccg
gtatcggtggcgcggctggagaagcagtggaaggagatggggagtgtgtga
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