Acidihalobacter ferrooxydans: BW247_09000
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Entry
BW247_09000 CDS
T09791
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
afy
Acidihalobacter ferrooxydans
Pathway
afy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BW247_09000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afy03400
]
BW247_09000
DNA repair and recombination proteins [BR:
afy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BW247_09000
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BW247_09000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
SMC_N
AAA_16
AAA_21
nSTAND1
UvrA_DNA-bind
AAA_22
NACHT
Viral_helicase1
AAA_25
AAA_18
AAA_23
AAA_33
ATPase
nSTAND3
DUF4350
SLFN-g3_helicase
DnaJ_CXXCXGXG
zf-C2HC_2
Motif
Other DBs
NCBI-ProteinID:
APZ43212
UniProt:
A0A1P8UH83
LinkDB
All DBs
Position
1904203..1909737
Genome browser
AA seq
1844 aa
AA seq
DB search
MTQSAHIRIHGARQNNLKHLDLELPLAELIVVTGVSGSGKSSLAFDTVYAEGQRRYVETF
SPYARQFLERMDKPAVDRVEGIPPAIAIDQTNPVRTSRSTVGTMTELNDHLKLLFARAAH
LYCRGCGQEVRRDTPESISARLFDEAGQDEPLLMVCFGISVPENFSAAEVEGYLEQQGYT
RMHNRAGACIEVVQDRLRLNEDNHGRLLEALETALLRGQGHLTVYRLNEQREAGEARRFS
AALHCATCDIDYAEPTPNHFSFNSPVGACDTCRGFGRVIGIDYRMVIPDESKTLAEGAIK
PWQTQSYAEVQGDLLRFARTSGIPIDVPWRELSDAQRRWVIAGEGDWDDGVWYGAERFFA
WLESKSYKMHIRVLLSKYRSYDDCPDCGGARLKTDSLLWRLGGRDEADAVLDPAQRFRPH
GVDLDDGTLRALPGLNVHDLMRLPLARCRAFFAALRLPTPLDQATDLLLGEIRARLAYLN
EVGLSYLSLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDIDRVVGVL
RRLRDAGNTLLVVEHDPQIMFAADRLLDMGPGPGEQGGEVVFFGPPSELNTATGSLTADY
LAGRRAVSAEASHVDSEIADWLEILGAAAHNLRDIDVRIPLGRLVCVTGVSGSGKSTLIG
DVLYPALMAHFGKPQEKPGAHREIRGINAIDGVVLVDQSPIGKTARSNPASYVGAFDAIR
KRFAADPLARERGYAAGTFSFNSGNGRCPSCAGSGFEHVEMQFLSDVYLRCPDCDGRRYR
APVLDVRLHGLDREQALSVADVLDLTVAEAMAFFADAPDVLHALAPLAAVGLDYLRLGQP
VPTLSGGGAQRLKLAKHLTGTESGHQLFLFDEPTTGLHFEDIARLLTAFRRLLAQGHSLV
VIEHNLDVMRAADWLIDLGPEGGEGGGRLIAAGPPQALIECAQSHTGAALRDYDAALARL
WRTPVAAQAAPASASDGAIRIRNAREHNLKGVDLAIPRERFTVITGVSGSGKSTIAFDIL
FNEGQRRYLESLNAYARQFVQPASRPEVDAVTGIPPTVAIEQRTSRGGRKSTVATLTEIH
HFLRLLFVKLGTQYCPDCDIPIEPQTPEAILARLLRDQRGRQLHLYAPLISGRKGIYTEL
AHWAAARGHGALRVDGALLPTDPWPKLKRYQEHDIDLPVGATIADAKHERELAELIARAL
DYGKGLLKVAVQGRDGEITFSTERACPGCGRSFEPLDPRLFSYNSNRGWCERCFGTGTQL
KGFDAEQTGEEGAWNAGYEGEEHVCPACHGQRLNPQALAVRLHDHSIAQYSALPVTAATQ
AFERMTPQGREADIARDILPEIRSRLAFLQEVGLGYLALDRAAPTLSGGEAQRIRLAAQL
GSNLRGVCYILDEPTIGLHPRDNRLLLDTLHALQRKGNTVVVVEHDEDTIRGADHLIDIG
PGAGSRGGRLVAQGDLAELLRHGESQTARCLAEPMRHPLYPRRTFAPEQDSALVIGGAAL
NNLRNVNVHIPLRRLVCVTGVSGSGKSTLVREVVHGNLRRLLARQGKRGRKPTLQGCTRL
DGYADLLRVLEVDQTPIGRTPRSCPATYVGFFDQIRKLFAQLPEARIRAYTAGRFSFNSG
GGRCPACEGQGMRRVEMSFLPDVVMPCEVCGGARYNTETLAVRYKDRSIADVLAMSVDEA
LAFFSAQPPIHRALALLHDVGLGYLTLGQPSPTLSGGEAQRIKLVTELAKAAPARGRKAE
AGTLYILDEPTVGLHMADVERLVHVLQRLVEAGNSVIVIEHNLDVVAEADWIVDMGPEGG
DGGGRVVAQGTPERLARRKKSSHTGRLLGAFLATRKTGAITETN
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcagtccgctcacattcgcatccacggggcgcgccagaacaatctcaagcacctc
gatctggagctgccgctggccgagttgatcgtggtcaccggtgtgtccggttcgggcaag
tcctcgctcgccttcgacaccgtgtacgccgagggtcagcggcgctatgtcgagaccttc
tcgccgtatgcgcggcagtttctggagcgtatggacaaaccggcggtggatcgtgtcgag
ggcattccgccagccatcgccatcgaccagaccaacccggtgcgcacctcgcgttcaacg
gtcggcaccatgaccgagctgaacgatcacctcaagctgctcttcgcgcgcgcggcgcat
ctgtattgccgtggctgcgggcaagaagtgcgacgtgatacgccagagtcgatctccgcc
cggctgttcgacgaagccggtcaggacgagccgctgctgatggtctgcttcggcatttcc
gtaccggagaatttctctgctgccgaggtcgaaggctacctcgagcaacagggctacacg
cgtatgcacaatcgcgccggcgcgtgcatcgaagtcgtgcaggatcgcctgcggctcaac
gaggacaatcacgggcgtctgctcgaagcgctggaaaccgcgctgctgcgggggcagggc
catctgacggtctatcggctcaacgagcagcgcgaggccggcgaggcgcggcgtttttcc
gccgcactgcactgtgccacctgcgacatcgattacgccgagccgacacccaaccacttc
tccttcaactcgccggtcggcgcctgcgacacctgccgcggcttcgggcgggtcatcggc
atcgactaccgtatggtgatcccggatgagagcaagaccctggccgagggcgcaatcaag
ccctggcagacgcagagctacgccgaggtgcagggcgatctgctgcgcttcgcgcgcacg
tccggtattcccatcgacgtgccctggcgcgagctgagcgacgcccagcggcgctgggtg
atcgccggcgagggcgactgggacgacggcgtgtggtacggcgccgagcgcttcttcgcc
tggctggagagcaagagctacaagatgcacatccgcgtgctgctgtcgaagtaccgcagc
tacgacgattgccccgactgcggcggcgcgcggctcaagaccgacagtctgctctggcgt
ctgggcgggcgcgacgaggcggatgccgtgctcgacccggctcagcgtttccgtccgcat
ggtgtcgatctcgacgacggcactctgcgtgcgctgcccggcctcaacgtgcacgacctc
atgcgtctgccgctggcgcgctgccgtgcattcttcgccgcgctgcgcctgccgacaccg
ctggatcaggcgaccgatctgctgctgggtgaaatccgtgcgcggctcgcctatctgaat
gaggtcgggctgagttatctcagtctcgaccggcagtcgcgcacgctatcgggcggcgaa
gtgcagcgcatcaacctcaccaccgcgctgggcacctcgctggtcaacacgctgttcgtg
ctcgacgagcccagcatcggcctgcatccgcgcgatatcgaccgcgtggtcggcgtgctg
cgccggctgcgcgacgccggcaacacgctgctggtcgtcgagcacgacccgcagatcatg
ttcgccgccgaccggctgctggacatggggccgggaccgggcgagcagggcggggaggtg
gtgtttttcggtccacctagcgaactgaacaccgcgaccggatcgctcactgcagactat
cttgccggccggcgcgcggtcagtgcggaggcttcgcatgtcgatagtgagatagccgac
tggcttgaaatcctcggcgcggccgcgcacaacctgcgcgacatcgatgtgcgcattccg
ctcggccgcctggtatgcgtcaccggcgtgtccggttcgggcaagtccacgctgatcggc
gacgtgctttatcccgcgctgatggcgcatttcggcaagccgcaggaaaagccgggggcg
catcgcgagattcgcggcatcaacgccatcgacggtgtcgtcctggtcgaccagagcccc
atcggcaaaaccgcacgctccaatccggcgagctatgtcggcgccttcgatgcgattcgc
aagcgcttcgccgccgacccgctggcgcgtgagcgtggttacgcggccggcaccttcagc
tttaactccggcaacgggcgctgcccgagctgcgcgggttcgggtttcgagcacgtcgag
atgcagtttctgtccgatgtctatctgcgctgcccggactgcgacggccgacgataccgg
gcgccagtgctcgatgtgcgcctgcacggcctggaccgcgagcaggcactctcggtcgcc
gatgtgctggatctgacggtcgccgaagccatggcgttcttcgccgacgcgcccgacgtg
ctgcacgcgctggcgccgctggccgcggtcgggctggactatctgcgtctgggccagccg
gtgccgacgctgtcgggcggcggggcgcagcgtctgaagctggctaaacacctcacgggt
accgaatccggtcatcagttgttcctgttcgacgaacccactaccggcctgcacttcgag
gacatcgcccgcttgctgacggcgttccgtcgcctgcttgcgcaaggtcattcgctggtg
gtgatcgaacacaatctggacgtgatgcgcgccgcggactggctcatcgacctcggtccc
gaaggcggggagggcggcggtcgcctgattgccgccgggccgccgcaggcgctcatcgag
tgcgcgcaatcacacaccggcgccgcgctacgcgattacgacgccgccctggcccggctg
tggcggacacccgtcgccgcgcaagccgcgcccgcgtccgcgtccgacggcgctatccga
atccgcaatgcccgcgagcacaatctcaagggcgtggatctggctatcccgcgcgagcgc
ttcaccgtcatcaccggcgtttccggctcgggcaagagcacgatcgccttcgatattctg
ttcaacgaaggccagcggcgttatctcgaatcgctcaacgcctatgcacgccagttcgta
cagcccgcatcgcgccccgaagtcgatgccgtcaccggcattccgccgacggtcgccatc
gaacagcgcaccagtcgcggtggacgcaagagcaccgtcgccaccctgaccgaaatccac
cattttctgcgcctgctgttcgtcaagcttggcacgcagtactgtcccgattgcgacatt
cccatcgaaccgcagacgccggaggcaatcctggcgcgcctgctgcgcgaccaacgcggg
cgccagctgcacctgtatgccccgctgatcagcggccgcaagggcatctacaccgaactc
gcacactgggcagccgcgcgcggccacggcgcattgcgcgtggacggcgcgttgctgccg
accgatccctggccaaaactcaagcgttatcaggaacacgacatcgatctgccggtcggc
gcaaccatcgccgacgccaaacacgaacgcgaacttgccgagctgatcgcgcgggcgctg
gactacggcaagggcctgctcaaggtggcagtccagggccgcgacggggaaatcaccttt
tccaccgagcgcgcctgccccggctgcggacgcagtttcgagccgctcgatccgcgcctg
ttctcctacaactccaatcgcggctggtgcgaacgctgcttcggcaccggcacgcagctc
aagggcttcgatgccgaacagacgggcgaggagggtgcctggaacgccggctacgaaggc
gaggaacatgtttgtcccgcctgccacggccagcgcctgaacccgcaagcgctggccgtg
cgcctgcacgatcattccatcgcgcagtacagcgccctgcccgtgacggccgcgacgcag
gccttcgagcgcatgacgccgcagggccgcgaggccgacatcgcccgcgacatcctgccg
gaaatccgcagtcggctggcttttctgcaggaagtcggattgggctatctggcgctcgac
cgcgccgcgccgacgctgtccggcggcgaagcgcagcgcatccgcctcgccgcgcagctc
ggctccaatctgcgcggcgtctgttacatcctcgacgagccgaccatcggcctgcacccg
cgcgataaccgcctgctgctcgatacgctgcatgccctgcagcgcaagggcaacaccgta
gtcgtggtcgagcacgacgaagacaccattcgcggcgcggatcacctcatcgacatcggt
cccggcgcgggttcgcgcggcggtcggctcgtcgcgcagggcgatctggccgaactgctg
cgccatggcgaatcgcagaccgcgcgttgtctggccgaacccatgcgtcatccgctctat
ccgcggcgcaccttcgcgccggagcaggatagtgcgctcgtcatcggcggggccgcactg
aacaatctgcgcaacgtgaatgtacacattccgctgcggcggctggtatgcgtcaccggc
gtgtccggctcaggcaagtcaaccctggtgcgcgaagtcgtgcacggcaatctgcgccgt
ctgctcgcccgtcagggcaaacgcggccgcaagccgacattgcagggctgtacgcgcctc
gacggttatgccgatttactgcgcgtgctggaagtcgatcagacaccgatcggccgtaca
ccgcgttcctgcccagctacttacgttggattcttcgaccagattcgcaagttgtttgcc
cagttgccagaggcgcgtatccgcgcctataccgccgggcggttctcattcaacagcggt
ggcgggcgctgtccggcctgcgaagggcagggcatgcgccgcgtggaaatgagcttcctg
cccgacgtagtgatgccctgcgaggtctgtggcggcgcgcggtacaacaccgagaccctg
gccgtgcgctacaaggaccgcagcatcgccgacgtgctggcaatgagcgtcgacgaggcg
ctggcgttcttcagcgcgcagccgccgattcatcgcgcgctggcattgctccacgacgtc
ggtctgggttacctgacgctcggccagcccagccccacgttatccggcggcgaagcgcag
cgcattaagctggtcacagaactggccaaggccgcgccggcgcgcgggcgcaaggcggaa
gccggcacgctctatatcctcgacgagccgaccgtgggcctgcacatggccgatgtggaa
cggctggttcatgtgctgcaacgtctggtcgaagcgggcaattcggtgatcgttatcgag
cataatctcgacgtggtcgccgaggcggactggatcgtcgatatggggccggagggcggc
gacggcggcggacgcgtcgtcgcgcagggcacgccagagcggttggcgcgacgcaaaaaa
agctcgcacaccggacgcctgctcggcgcgttcctggccacccgcaagacaggcgctata
acggagacaaactga
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