Antechinus flavipes (yellow-footed antechinus): 127538047
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Entry
127538047 CDS
T08818
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afz03016
]
127538047
Enzymes [BR:
afz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
127538047
Transfer RNA biogenesis [BR:
afz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127538047
Prokaryotic type
tRNA splicing ligases
127538047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
127538047
NCBI-ProteinID:
XP_051817488
LinkDB
All DBs
Position
5:complement(280912130..280930720)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaatgacgagctgcagtttctggacaagattcataagaactgctgg
aggatcaagaagggcttcgtgcccaatatgcaggtggaaggagtgttctatgtgaatgac
ccgctggagaaactaatgtttgaggagttaagaaatgcctgccgaggtgggggtgttggt
ggcttcctgccagcaatgaaacagattggcaacgtggcagccttacctgggattgtccat
agatctattgggcttcctgatgtccattctggttatggatttgctattgggaatatggct
gcctttgatatgaatgacccagaagctgtggtgtccccaggtggtgtcggatttgacatc
aactgcggggtccggctgctgagaaccaacctggacgagagcgacgtccagcccgtgaag
gagcagctcgcccaggccatgtttgaccacattcctgttggggtgggatccaaaggagtt
attccaatgaacgctaaggacttagaggaggctctggagatgggggtggactggtctctc
cgagagggctacgcctgggcagaggacaaagagcactgtgaggaatatgggcgtatgctg
caggccgaccccaacaaggtctccgccagggctaagaagagaggccttcctcagcttgga
actctgggagcaggaaatcattatgcagaaatccaagttgtggatgagatttttaatgaa
tatgctgctaagaagatgggcattgaccataagggacaggtgtgtgtgatgatccatagc
ggcagcagaggcctgggccatcaagtagctacagatgcactggtggccatggaaaaggcc
atgaagagagacaagattattgtgaatgaccgccagttagcgtgtgctcggatcagctcc
ccggaggggcaggactacctgaaggggatggccgctgctgggaactacgcctgggtcaac
cgctcttccatgaccttcctgacccgacaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctccatgtaatctatgacgtctcccacaatatcgccaaagtggagcag
catgtggtggatggcaaggaacggaccctgctggtgcacaggaagggctccacgcgggcc
ttccctccacaccaccccctcatcgctgtggattaccagctgaccggacagccagtcctc
attgggggcaccatgggaacctgcagctatgttcttactgggaccgagcagggcatgact
gagaccttcggaaccacctgtcacggagccggtcgtgcgttatcccgagcaaaatctcga
cgtaacttagacttccaggatgttttggataaattggctgacatgggcattgcgatccgg
gtggcttcccctaaactggtgatggaagaggctcctgagtcctataaaaatgtgacagat
gtcgtgaatacctgccacgatgctgggatcagcaagaaagcaattaaactgagaccaatc
gcagtcatcaaaggctaa
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