Antechinus flavipes (yellow-footed antechinus): 127538094
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Entry
127538094 CDS
T08818
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127538094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127538094
Enzymes [BR:
afz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127538094
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127538094
mRNA degradation factors
3'-5' decay
Pan complex
127538094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
WD40_CDC20-Fz
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
127538094
NCBI-ProteinID:
XP_051817579
LinkDB
All DBs
Position
5:218964584..218978744
Genome browser
AA seq
1198 aa
AA seq
DB search
MNFEGLDPGLTEYAPALHPTLDPVLDAHLNPSLLQNVELDPEGVALEALSVPESVHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR
QIQSLENGVLFLTKNNLKYMARGGLIIFDYLLDESEDMHSLLLTESSTLLVGGLQNHVLE
IDLNTVQETQKYAVEIPGITIMRQSSRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLS
DFDVHGNLLAACGFSSRLSGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQTGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWADS
PEATFNPYSRETEFALPCLVDSLPPLDWNQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKELDSEFDNFNQVPESPIGREE
EPHLYMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP
VRCLIQNHLCQKEFCLGCELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADS
DEVSGKGNLARLIQRWNRFILTQLHQDMQEQEGPQAYRGAGGSFCSSGDSVIGQLFSCEV
ENCSLCRCGKETVRVSSTLLFTLSYPESHSSDKSMKNYDFAQVLKRSICLEQNTQAWCEN
CEKYQPTVQTRNIRHLPDVLVINCEVNSSKEADFWKLQAEFAFKMAVKKAGGEIPKNKES
ALADWKDLGSPKGRPLCTSIEELKNVWLPYSIQMKLTKNKGLDVSNWTDGDEQNPLREGE
DNVYVYDLMATVVHILDSRTGGSLVGHIKVGETYHQRKEGVTHQQWYLFNDFLIEPVDKC
EAVQFDMSWKVPAILYYVKRNLNTKYNLSIKNPIEASVLLAEASLARKQRKTHATFIPLM
LSEMPQAGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGVPF
IDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGL
QKDFRVINLMVPKDQVIDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDARTAL
QLYRKYLELSKNGSEPESFHKVLKGLYEKGRKMDWKVPEPDGQASPKNSAVFSTVLAL
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgagggcctggatcctggactgacggagtatgccccagccctgcatcccacc
ctggaccccgtcctagatgcccacctgaaccctagtctgctgcagaatgtggagctggac
cccgagggagtggccctggaggcactgtcggtcccggagtccgtgcacatcatggagggc
gtctactcggagctgcacagcgtggtggccgaggtgggcgtgcctgtgtccgtgtcccac
ttcgacctccacgaggagatgctgtgggtggggagtcatgggggccatgccacctcgttc
tttggcccagccctggagcgctattcatccttccaagtcaatggcagtgatgacattcgg
cagatccagagcctggaaaatggtgttctttttcttactaagaacaacttaaaatatatg
gcccgtgggggactcattatctttgattacctcctggatgagagcgaagacatgcacagc
cttctcctgaccgagagcagcaccctgctggtaggaggactgcaaaaccatgtgctggag
attgacctcaacactgtccaggaaacacagaagtatgctgtggagatcccaggcatcacc
atcatgaggcagtcaagtcgatttttcttctgtggccacacatccggcaaggtatccctt
cgggatcttcgtactttcaaggtggagcatgaatttgatgccttctcagggagtttgtca
gactttgatgtgcatggcaacctgctggcagcctgtggcttctctagccgcttgagtggt
ttggcctgtgaccgattcctcaaggtctatgatttgcgaatgatgcgagccattacacca
ctacaagtgcacgttgaccctgccttcctgcgcttcatccccacttatacctcccgcctt
gccatcatctcacagacagggcaatgccagttttgtgagcccacaggcctggctaatcca
gcagatatcttccatgtgaatcctgtgggacctctgctgatgacatttgatgtgtcagct
agcaagcaagccctagcctttggggactcagagggctgtgtacacctctgggctgattcc
cctgaggcaactttcaacccctattcccgtgaaactgaatttgccctaccttgccttgtt
gactcactgccacccctggactggaaccaggatctactgcctctctccctcatcccagtt
ccactcaccactgacactcttctctctgactggccagctgccaactctgctcctgcgccc
aggcgggcaccaccagtggatgcagagattctgcgcaccatgaagaaggtgggcttcatt
ggctatgcacctaatccccgaaccaggcttcgtaaccagattccttaccgcctcaaggaa
ctagatagtgagtttgacaacttcaaccaggttcctgagtcacccatagggcgggaagaa
gagccacatctctacatggtctccaaaaagtaccgaaaggtgaccatcaaatactcaaag
ctaggtctagaggattttgacttcaagcactacaataagacgttgtttgctgggctggaa
ccccacattcccaatgcttattgtaattgcatgatccaggtcttatacttcctggagcct
gtccgctgtctaatccagaaccacctgtgccagaaggagttctgcctgggctgtgagctg
ggtttcttgttccacatgctggacctttctcgtggtgatccatgtcagggcagtaacttt
ctgagagcattccgcaccatccctgaagcctcagcccttggcttaatcctggcagattca
gacgaggtttcaggcaagggcaatctggccaggctcatccaaaggtggaaccgttttatt
ttgacacagctacaccaagacatgcaggaacaggaaggccctcaggcctacagaggtgca
ggaggcagcttttgttcatcaggggattcagtcattgggcagctcttcagctgtgaggtg
gagaattgtagcctgtgccggtgtggcaaagaaacggtgcgggtgtcctctaccctgctc
ttcacactctcctatccagagagccacagtagtgataagagtatgaagaactacgacttt
gcgcaagtattgaagagaagcatttgtctggaacagaacacacaagcttggtgtgaaaac
tgtgaaaagtaccagcccacagtacagacccgcaacattcgccatctcccagatgttcta
gttatcaactgtgaggtcaatagctctaaagaggcagatttctggaagttgcaggcagag
tttgctttcaagatggcagtgaagaaggcaggtggggagatccctaaaaacaaagagagt
gctctggctgattggaaggacctaggaagtccaaaagggcgccctttgtgtacttccatt
gaggagttaaagaatgtctggcttccatactctattcagatgaagcttacaaagaacaag
ggattggatgtcagcaactggaccgatggagatgagcagaatccactcagggaaggggag
gataacgtctatgtgtatgatctgatggctactgtggtacacattctggattcacgaact
gggggcagcctggtgggtcacatcaaagttggggaaacctaccaccagcgcaaagagggt
gttactcaccagcagtggtacctcttcaatgacttccttattgaacctgtggataagtgt
gaagccgtacaatttgacatgagctggaaggtgcctgccatcttatattatgtcaagagg
aacctcaacaccaaatacaacctgagcatcaagaaccctattgaagcaagcgtgctgctg
gccgaggcctcactggcccggaagcagcgcaagacccatgctaccttcatcccactgatg
ctgagtgagatgccacaggccggggacctggtgggcctggatgctgaatttgtcaccctt
aatgaggaggaggcagagctgcgcagtgatggcaccaagtccaccatcaaaccaagccag
atgtcagtggctagaatcacctgtgttcggggccaagggccaaacgaaggtgtccccttc
attgatgactacatctctacacaggagcaggtggtggattatttgactcagtactcaggg
ataaagcctggagaccttgatgctaagatttcctctaaacaccttaccactctcaagtct
acgtacctgaaacttcgctttcttatagatattggtgtcaagtttgtgggtcatggactg
caaaaggacttccgggtcatcaatctcatggtgcccaaagaccaggttattgatactgtc
tacctcttccacatgccccgaaaacgaatgatctccttgcgcttccttgcttggtatttc
ttggatctcaagatccaaggggagacccatgatagcattgaggatgcccgaacagctctt
caactttaccgaaagtatctggagttaagcaaaaatggcagcgaaccagagtccttccac
aaagtgctcaaggggctttatgagaagggccgaaaaatggattggaaggttcctgagcct
gatggccaggcaagccccaaaaattccgccgtcttctccacagtgctggcgctctga
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