Antechinus flavipes (yellow-footed antechinus): 127539292
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Entry
127539292 CDS
T08818
Name
(RefSeq) collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz04151
PI3K-Akt signaling pathway
afz04510
Focal adhesion
afz04512
ECM-receptor interaction
afz04611
Platelet activation
afz04820
Cytoskeleton in muscle cells
afz04926
Relaxin signaling pathway
afz04933
AGE-RAGE signaling pathway in diabetic complications
afz04974
Protein digestion and absorption
afz05146
Amoebiasis
afz05165
Human papillomavirus infection
afz05205
Proteoglycans in cancer
afz05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
127539292
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127539292
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127539292
09142 Cell motility
04820 Cytoskeleton in muscle cells
127539292
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
127539292
09152 Endocrine system
04926 Relaxin signaling pathway
127539292
09154 Digestive system
04974 Protein digestion and absorption
127539292
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
127539292
09172 Infectious disease: viral
05165 Human papillomavirus infection
127539292
09174 Infectious disease: parasitic
05146 Amoebiasis
127539292
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
127539292
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
127539292
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
afz00536
]
127539292
Glycosaminoglycan binding proteins [BR:
afz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127539292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
127539292
NCBI-ProteinID:
XP_051819380
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Position
5:692664..724865
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AA seq
1367 aa
AA seq
DB search
MLSFADARLWLLLAATWCLAAAQAVQEPPRGRKGPQGDRGPRGQRGPPGPPGRDGEDGPP
GPPGPPGPPGLGGNFAAQYDASKGLDMGPGPMGLMGPRGPPGASGPPGAQGFQGPAGEPG
EPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGIVGPQGARGFPGTPGLPGFKGIRG
HNGLDGLKGQAGAPGVKGEPGAPGENGTPGQAGARGLPGERGRIGGPGPAGARGSDGSVG
PVGPAGPLGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGELGLPGMTGPVGPAGNPG
ANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPAGAAGASGPRGLAGEPGPAGSKGESGNKG
EPGSAGPQGPPGPNGEEGKRGPNGEPGSTGPMGPPGLRGVPGSRGLPGADGRAGGMGPPG
NRGPSGPAGARGPNGDAGRPGEPGLMGPRGLPGSPGNVGPTGKEGPAGLPGIDGRPGPTG
PAGNRGEPGNIGFPGPKGPNGDPGKAGEKGHAGLAGARGAPGPDGNNGAQGPPGPTGVQG
GKGEQGPAGPPGFQGLPGPSGPAGEGGKVGERGLPGEFGLPGPAGPRGERGPPGESGAVG
PTGSIGSRGPSGPPGPDGNKGEPGVVGAPGNAGPAGSGGVPGERGAAGVPGGKGDKGETG
PRGEFGNPGRDGARGAPGAMGAPGPAGATGERGEAGPAGPVGPTGNRGAPGDRGEAGPAG
PNGFAGPPGAAGQAGAKGERGTKGPKGENGVVGPTGPVGAAGPSGPNGPPGPVGGRGDGG
PPGMTGFPGAAGRTGAPGPAGITGPPGPPGAAGKEGPRGPRGDQGPLGRAGETGAVGPPG
FAGEKGPPGESGASGPPGSSGPQGLLGAPGILGLPGSRGERGLPGVSGSVGEPGPLGISG
PPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGLAGHKGERGYPGNPGAVGNAG
APGPHGTVGPAGKPGNRGEPGPVGSVGPVGPFGARGPSGPQGPRGDKGEVGDKGPRGMNG
FKGHNGFQGLPGISGQHGDQGAPGSTGPAGPRGPAGPSGPPGKDGRPGHAGAVGPAGLRG
SQGSQGPAGPPGPPGLPGPPGPSGGGYDFGYEGDFYRADQPRTQASLRPKDYEVDATLKS
LNNQIETILSPEGSKKNPARTCRDLRLSHPDWNSGFYWVDPNQGCTMDAIKVYCDFSTGE
TCIQAQPENIPAKAWHNPRSPQGKKHVWFGETLNGGTQFEYNTEGVTSKDMATQLAFMRL
LANHASQNITYHCKNSVAYMDAESGSLKKAVILQGSNDVELTAEGNSRFTYTVLEDGCSR
KNNEWGKTVIEYKTNKPSRLPFLDIAPLDIGGTDQELRLHIGPVCFK
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgcggacgcgcgcctctggctgctgctcgcggccacttggtgcctggcc
gcagctcaggctgtacaggagccacccagaggaagaaagggaccacaaggagatagaggt
ccacgaggtcaaaggggtcccccaggccctccaggcagagatggtgaagatggtccccca
ggtcctcccggaccccctggtcctcctggtcttggtgggaactttgccgcccaatacgat
gctagcaaaggattggacatgggcccaggaccaatgggtttgatgggacccagaggcccc
cctggtgcaagtggacctcctggtgcccaaggcttccaaggacccgccggtgagccggga
gagcctggtcagactggccccgcaggtgcccgaggaccccctggaccccccggaaaggct
ggtgaagatggtcaccctgggaagccaggaaggcctggtgagagaggaattgttggacca
cagggcgctcgaggcttccccgggactcccggtctgcctggattcaagggaatccggggg
cacaatggtcttgatggactgaaaggacaagccggggctcctggagtcaagggtgaaccc
ggcgcccccggagaaaatgggacccctggtcaagcgggagcccgaggcctcccaggagag
aggggacgcatcggagggcccggccctgcgggagctcgcggaagcgatggcagcgtcggc
cccgtcggtcccgccggtccccttggctcggcgggtccccctggcttcccaggcgccccc
ggccctaagggagaactcggccccgtaggcaaccctggccctgccggccctgccggtcct
cgtggagagctgggtcttcccggcatgactggtcctgtcggtcctgcggggaatcccggt
gccaatggtctgacgggagccaagggggcagcgggtctccctggcgtggctggtgccccc
ggtctgcccgggccccgtggcatccctggtcctgctggtgctgctggagcttccggtcca
agaggacttgcgggtgagcctggtcctgctggttccaaaggagagagtggaaacaagggg
gagccgggctccgccgggccccaaggccctcccggccccaacggtgaagaaggcaagaga
ggacccaacggagagccaggatccacgggccccatgggaccccccggcctcagaggcgtc
cctggatcccggggtcttcctggagccgacggccgagctggaggcatgggtccccccggt
aaccgcggcccctccggacctgctggagcccgaggccccaatggagatgccggccggcct
ggcgagcccgggctcatgggcccccgcggtctccccggctcccctggaaacgtcggcccc
actgggaaggaaggccctgctggtctccccgggatcgatggccgacccggccccacaggt
cctgctgggaacagaggcgagcccgggaacatcggctttccaggacccaaaggccctaac
ggcgatcctggcaaagccggagagaaaggtcacgctggtctcgctggtgctcggggcgcc
cccggccccgatgggaacaacggtgctcagggaccccccggccccacgggtgtccaaggt
gggaaaggtgaacagggccccgctggtcctccaggcttccagggtctacctggcccctcg
ggccccgcaggtgaaggtggcaaagtaggagaaaggggtctccctggtgaatttggcctc
cctggccctgctggcccaagaggtgaacgcggtccccccggagaaagtggagctgttggt
cctacaggttccattggaagccgcggtccatctggtcccccgggccccgatggcaacaag
ggagagcctggtgtggttggtgcccctggaaacgcgggtcccgctggctctggtggagtg
ccaggagagcgtggtgcagctggtgtccctggaggcaaaggagacaagggtgaaactggt
cccagaggagaatttggaaacccaggcagagatggcgctcggggagctcctggtgccatg
ggcgccccaggtcccgccggagccaccggggagaggggtgaagctggtcctgcaggtcct
gttggtcccaccgggaaccgaggagctcctggtgaccgcggagaggccgggcccgcaggc
cccaatggatttgctggccctcccggcgctgctggccaagctggagcaaagggagaacgc
ggaaccaaggggcccaagggagagaacggcgtcgtgggccccaccggccctgtgggcgca
gctggcccctctggtcccaatggcccccctggtcctgttggaggtcgtggcgatggcggt
ccccctgggatgaccggcttccctggcgctgctggaagaactggagcccctgggcctgct
ggtatcactggccctcccggcccccccggtgctgctggaaaagaagggcctcgaggtccc
cgtggtgaccagggtcccctcggccgtgctggagagacaggcgccgtcggcccccctggt
ttcgctggagagaagggtccccccggagagtccggtgccagtggtccccccggctcctcg
ggccctcaaggtcttctcggtgctcctggcattctgggtctgcccggctcaagaggcgag
cgtggtcttcccggggtctcgggctctgtgggtgaacccggtcctcttggcatttctggt
cctcccggagctcgagggccccccggggccgtgggtagccctggcgtcaacggcgctcct
ggcgaagctgggcgtgatgggaaccctggcaacgatggtccccccggccgagacggtctc
gctggtcacaagggagagcgaggctaccccggcaatcctggtgctgttggcaatgctgga
gctcctgggcctcatgggactgtgggtcctgctggcaaacctggaaaccgcggtgagccg
ggtcctgttggctcggtgggtcctgttggtcccttcggtgcaagaggtcccagcggtccc
caaggtccccgaggtgacaagggagaagttggtgacaagggaccaagaggcatgaatggt
ttcaaaggacacaatggattccaaggcctccctggcatttctggccaacatggcgatcaa
ggtgctcccggatcaactggccctgcaggccccaggggccctgctggtccttctggtcct
cccggtaaagatggtcgccctggacatgcaggtgccgttgggcctgctggtctgcgtggt
tctcagggcagccaaggccccgcgggtcctcccggcccccccggcctgcccggtcccccc
ggcccaagcggcggcggctacgacttcggttacgagggcgatttctacagggctgaccag
cctcgcactcaggcctccctcagacccaaggactacgaagtggacgctactctgaaatcc
ctcaacaaccagatcgagaccatcctcagccccgaaggctccaagaagaaccctgcccgc
acctgccgagacctgaggctcagccacccagactggaacagcggtttctactgggtcgac
cccaaccagggctgcaccatggacgccatcaaagtgtactgtgacttctccaccggggag
acctgcatccaagcccagcctgagaacatccccgccaaggcctggcacaatcccaggagc
ccccagggcaagaagcacgtgtggtttggggagacgctcaatggcggcacccagtttgaa
tacaacacggaaggggtcacctccaaggacatggccacccagctggccttcatgcgcctg
ctggccaaccacgcctcccagaacatcacctaccactgcaagaacagcgtggcttacatg
gacgccgagagcggctctctgaagaaggccgtcatcctgcagggctccaacgacgtggag
ctcaccgccgagggcaacagccgcttcacctacaccgtcctggaggacggctgctccaga
aagaacaatgagtggggaaagaccgtcatcgaatacaagaccaacaagccctcccgcttg
cccttcctggacatcgcgcctttggacattgggggcacagaccaagaactccgtttgcac
attggcccagtctgtttcaaataa
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