Antechinus flavipes (yellow-footed antechinus): 127539936
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Entry
127539936 CDS
T08818
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03013
Nucleocytoplasmic transport
afz05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127539936
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
127539936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127539936
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127539936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
127539936
NCBI-ProteinID:
XP_051820349
LinkDB
All DBs
Position
6:166157882..166181343
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AA seq
691 aa
AA seq
DB search
MRKSREEPTKNAKVPGESRGGAGVRGVRKPGGSQGQPHSGAARADRHSPAPRSRCESHRG
DPAHAHFSQPRLTKQFPRDATETRRDARRASSEAPPPAVPCRSREPFRFGFSFPGRTLPP
VHRAPLESCRGPGGVMSFNFGAPAGSTATTATPAAPTGFGGLEAANSTNTGFNFGGFGLA
ANPAVNFNIGNFGVSTTAAAPFSFGNPLASAGTFGGFGTTTTTSGSAFSFSAPTNTGTSG
LFGATQNKGFGFGTGFGTTTGSSTGLGTGLGFGTFNTQQSQSNLGGLFSQPTQAPVQSNQ
LINTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAV
GYSCMPNNKDEDGLVVLIFNRKEADIRSQQQQLIESFHKILGGNQTLTVNVEGVKTLPDD
QTEVVIYVVERSPNGTSRRVPATTLYAHFEQANIKTSLQQLGVTLSMTRTELSPAQIKQL
LQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISE
DISELQKNQTTTLAKIAQYKRKLMELSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDT
IQCELNAPTQFKGRLNELMSQIRMQNHFGAVKSEERYYVDADLLREIKQHLKQQQEGLSH
LISIIKDDLEDIKLIEHGLNENIHIRGGVFS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaatcgagagaagaaccaacaaaaaacgctaaagtcccgggggagagccgggga
ggggcgggggtgcggggagtgcggaagcctgggggttcccaagggcagccgcattccgga
gctgcacgtgcagatcggcattcaccggcgccccgatctcgctgtgagtcgcaccgcgga
gaccctgcgcacgcgcacttttcccagccacgactcacgaaacaattccctcgtgacgcc
acagagacgcgacgcgacgcaaggcgggcttcctccgaggccccacctcctgccgtcccc
tgccgctcccgggaaccctttcgtttcgggttctcgttccccggccggacccttccaccg
gtacaccgagcgccccttgagagctgccgcggccccgggggcgtcatgtctttcaatttc
ggggctcccgcgggcagcacggccacgaccgccacccccgccgcccctacaggatttggt
gggctggaggctgccaactccaccaacactgggtttaattttgggggtttcggattagct
gctaatcctgcagtgaactttaatattgggaatttcggtgtttccaccaccgccgcggcc
cccttcagttttggtaaccctctggccagcgcaggtacgtttggagggtttggaaccacc
actacaacgtcaggttctgcattcagcttttctgctcccactaacacaggcacaagtggc
ctctttggtgctactcagaacaaaggttttggatttggaactggttttggcacaactaca
ggaagcagtactggtttgggaactgggctaggatttggtacatttaatacacagcagagt
caaagtaatttaggtggtctcttcagtcagcccacgcaagcccccgtccagtcaaaccag
ctgatcaatacagcaagtgctctttctgccccaacactactgggagatgaaagagatgct
attttggcaaaatggaatcaactccaggccttctggggaacaggcaagggatacttcaac
aataacattccacctgtggaatttacccaggaaaatcccttctgtagatttaaggcagta
ggttatagctgcatgcccaacaataaggatgaagatggactggtagttttaattttcaat
agaaaggaagcagatatccgaagccagcaacaacagctaatagaatcattccataaaatt
ctgggaggaaaccagacccttactgttaatgtggaaggtgtgaaaacattgccagatgac
cagacagaagttgtcatatatgttgttgaacgttctccaaatggcacgtcaaggcgtgtt
ccagctacgacactatatgcccattttgaacaggcaaatataaaaacatcattgcagcaa
cttggagttaccctttctatgactagaacagagctctctcctgcacagatcaagcagctt
cttcagaatcctcctgctggtgttgatccaattatctgggaacaggccaaagtggataac
cctgactctgaaaagctgattcctgtgccaatggtgggtttcaaagaacttctccgaaga
ttgaaggtccaagaccagatgactaagcagcatcagaccagattagatattatatctgaa
gatatcagtgagttacagaagaatcagacgaccactctggctaaaatagcccaatacaag
aggaaactcatggagctttcccataggaccttgcaggtcctgattaagcaggaaattcag
agaaagagtggttatgctatccaagctgacgaagagcagctccgagtacagctggacaca
attcaatgtgaactaaatgcacctacacagttcaagggtcgactaaatgagttgatgtcc
cagatcaggatgcagaatcactttggagctgtgaaatctgaggaacgatattatgtagat
gctgatcttctccgggaaatcaaacagcatttgaaacaacaacaggaaggcctcagccac
ttgattagcatcataaaagatgatctggaggatataaaattgatagaacacggattgaat
gagaacatccatatcagaggaggagtcttcagttga
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