Antechinus flavipes (yellow-footed antechinus): 127540865
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Entry
127540865 CDS
T08818
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz05016
Huntington disease
afz05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
127540865
05022 Pathways of neurodegeneration - multiple diseases
127540865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127540865
04131 Membrane trafficking [BR:
afz04131
]
127540865
03029 Mitochondrial biogenesis [BR:
afz03029
]
127540865
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127540865
Membrane trafficking [BR:
afz04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
127540865
Mitochondrial biogenesis [BR:
afz03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
127540865
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
HEAT_ECM29
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
127540865
NCBI-ProteinID:
XP_051821741
LinkDB
All DBs
Position
6
Genome browser
AA seq
3130 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQPPPPPAQPPQPPQAQPPQQPSQQQPQQPPPPPPPPQPG
PSGVEEPAHRPKKELSTTKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSD
DAESDVRMVADECLNKVIKALMESNLPRLQLELYKEIKKNGASRSLRAALWRFAELAHLV
RPQKCRPYLVNLLPCLTRISKRTEESVQETLAAAIPKIMASFGNFANDNEIKVLLKAFIA
NLKSSSPTIRRTAAGSAVSICQHSRRTQYFYTWLLNVLLGLLVPVEEEHSTLFILGVLLT
LRYLIPLLQQQVKDMSLKGSFGVTRKETEVSPSADQLIQVYELTLHYTQHQDHNVVTGAL
ELLQQLFKTPPAELLQALTTSGGIGQVNVTKEEFTSRSRSGSIVELIAGGGSSCSPVLSR
KQKGKVLLGEEEGLEDDPESRSEVSSTAFAASMKSEITGELASSSGVSTPVSTSSAADST
GHDIITEQPRSQHTLQSDPVDLAGCDLTSAATDGDEEDMLSRSSSQISAVPSDPTMDMND
GTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGTESQYSGMQIGQLQDEDDESSNVLP
DETADNFRNSTIALQQPHLLKNTGHSRQPSDSSVDRFLSKDETVEPGDHENKPSRIKGDI
GHFTDADLPPLVHCVRLLSASFLLTGEKGALVPDREVRVSVKALAVSCVGAAVALHPESF
FSKLYKTPLETMEHPEDQYVSDILNYIDHGDPQIRGATAILCGTIIYSILNKSRFSVENW
LAVVRSSTGNTFSLVDCIPLLQKTLKDESSVTCKLACTAVKHCVMSLCNSCYSELGLQLI
IDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEARADHLHKGSHHYTGLLKLQDRVLNN
VVIYLLGDEDPRVRHVAASSLIRLVPKLFYNCDQGQTDPVVAVARDQSSVYLKLLMHETQ
PPSHFSVSTITRIYRGYNLLPNITDVTMENNLSRVIAAVSHALTISTTRALTFGCCEALC
ILSTAFPVCIWSLGWHCGVPVASPSDDSRKSCTVGMATTILTLLSSAWFPLDLSAHQDAI
ILAGNLLAASAPKSLKSPWTTEDETNPGAMKQEEPWPALADRTLVTMVEQLFSHLLKAIN
ICAHVLDDVTPGPAIKAALPSLTNPPSLSPIRRKGKEKESGEQTVPLSPKKGNEASPASR
SSDPSGPAITSKSSSLGSFYHLPSYLKLYDVLKATHANYKVTLDLQNSNEKFGGFLRAAL
DVLSQILELATLQDIGKCVEEILGYLKSCFNREPTMATVCVQQLLKTLFGTNLASQYDGL
SSKPSKSQGKAQRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEHDTSGWF
DVLQKVSTQLKTNLTNVTKHRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLDL
LAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHS
KQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVA
VSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQVADIILPMLAKQQMHIDSHEAL
GVLNTLFEILAPSSLRPVDMLLRSMFITPNTMASVSTVQLWISGILAILRVLISQSTEDI
VLSRIQELSFSPYLISCQVIKKLRDGGSSLPTPDDQSEVKQVKCLPEETFSRFLLQLVGI
LLEDIVTKQLKVEMTEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTGDGSDG
SFYTLESLSELVRSMIPTHPSLVLLWCQILLLVNYTNYNWWSEVHQTPKRHSLSSTKLLS
PQMSSDGEDSHVASTLGVCNREIVRRGALILFCDYVCQNLYDSEHLTWLIVNHIQDLISL
SHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSSPTTLKKTLQCLEGIHLSQSGAVLM
LYVDKLLCTPFRVLARMVDTLACRRVEMLLAANLQNSMSQLPVEELNRIQEYLQKSGLAQ
RHQRLYSLLDRFRRTVAPETASPSPVVTSHPLDGENHLSLEMINPDQDWYVSLVKSQCCT
KSDSALLEGAELVNRIPPDELAPFMMSKEFNLSLLAPCLSLGIREISSGQKSSLFETARS
VTLDRVASLVKELPPNHHVFEPLLPIETSAYWNQLSDLFGNAVIYHSITTLACALAQYLV
LFSKLPSHLQLPPEKESDVLKFVVVALEALSWHLIHEQMPLSMDLQAVLDCCCLTLHLPG
LWNMLSSIEYVTHVCSLIHCIRFILEAIAVQPGDQLLSPERRKNTPRGISEDEVDSDVQV
PKYITTACEMIAEMVAALQTVLALGHKRNSGIPAFLTPVLKNIIISLARLPLVNSYTRVP
PLVWKLGWSPKPGGDFGTTLPEIPVEFLQEKEIFKEFIYRINTLGWTSRTQFEETWATLL
GVLVTQPIVMDQEESQQEEDTERTQINVLAVQAITSLVLSAMTLPVAGNPAVSCLEQQPR
NKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDNIPTHHLYQAWDPVPSLSPAMSGTLI
SHEKLLLQINTEREMGNMSYNLGQVSIHSVWLGNNITPLREEEWDEDEEDESDLPAPSSP
PTSPINSRKHRAGVDIHSCSQFLLELYSQWILPSSSAKRTPVILISEVVRSLLAVSDLFT
ERNQFEMMYLTLTELRRVHPSEDEILLQYLVPATCKAAAVLGMDKAVAEPVSRLLETTLR
STHLPSKIGALHGILYVLECDLLDETAKQLIPIISDYLLSNLRGIAHCVNLHSQQHVLVT
CAAAFYLMENYPLDVGPEFSAAVIQMCGVMLSASEESTPAIIYHCVLRGLERLLLSEQLS
RLDGESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKISPGRPSDPNPTAPDSESVI
VAMERVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFM
ATVVYKVFQTLHTTGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWVSAI
LPHIISRMGKSEQVDINLFCLVAIDFYRHQIDEELDRRAFQSVFEVVASPGNPYHRLLTC
LQNVHKIATC
NT seq
9393 nt
NT seq
+upstream
nt +downstream
nt
atggccaccctggagaagctgatgaaggcattcgagtcccttaagtccttccaacagcaa
cagcagcccccgccgccgccggcgcagcctccacagccaccccaggcgcagcctccccag
cagccgtcgcagcagcagccccagcagccgccgccgccgccgccgccgccgcaacccggg
ccgtccggggtggaggagccggctcaccgaccaaagaaagaactttcaactactaagaaa
gaccgagttaatcattgcctgacaatatgtgaaaacatagtggctcagtctctcagaaat
tctccagaatttcagaaacttttaggcattgctatggaactctttcttctgtgcagtgat
gatgcagaatcagatgtcagaatggtagctgatgaatgtctcaataaagttataaaagct
ttgatggaatccaatcttcccaggttacagttagaactctacaaggaaataaaaaagaat
ggtgcttctcgcagcctgagagctgccctttggaggtttgctgaacttgcccatctggtt
cgacctcaaaaatgcagaccatatttggtaaatcttttgccttgtctgactcgaataagc
aagagaacagaagaatctgtacaagaaactttggcagctgctatacccaaaattatggca
tcttttggcaactttgcaaatgacaatgaaattaaggttttattaaaagctttcatagct
aatctcaagtcaagttctcctacaatacggcgaacagcagctggatcagcagtgagcatc
tgccagcattcaaggaggacacagtatttttatacctggttacttaatgtacttttaggc
ttactagttcctgttgaggaggagcattctactctttttattcttggagttttgctcaca
ttgaggtatttaattcccttgctccaacagcaagtcaaggacatgagtttgaaagggagc
tttggtgtcactagaaaagaaactgaagtctcaccttctgcagaccagctcatccaggta
tatgaattgactttgcattacacccagcaccaagatcacaatgttgtaactggagcatta
gaattattgcaacaactttttaaaacacctccagctgagcttcttcaagccctgaccact
tcgggtggtattggacaggtcaatgtgaccaaagaagagtttactagcagaagtcgcagt
ggaagtattgtggaacttatagctggaggggggtcttcatgcagccctgttctttcaaga
aaacaaaaaggtaaagtgctcttaggagaagaagaaggtttagaagatgacccagaatca
aggtctgaagttagcagcacagcatttgcagcctcaatgaagagtgaaattacaggtgaa
ttggcttcttcatcaggtgtatctactcctgtctccacaagttctgctgctgattccaca
ggtcatgatatcatcactgagcagcccaggtcacaacatactttacagtcagatcctgtt
gatctggctggctgtgacttgacaagtgcagccacagatggggatgaagaggatatgctt
agtcgcagttcaagccaaatcagtgctgtcccttctgatcctactatggacatgaatgat
gggacccaggcttcatcaccaattagtgatagttcacagacaactacagaaggtccagat
tcggctgtgactccttcagacagttctgaaattgtattagatggaactgaaagccagtat
tcaggaatgcaaattggacaattacaggatgaagatgatgaatcatcaaatgttcttcct
gatgagactgcagacaatttcagaaactctactattgcacttcagcagccccatctcctg
aaaaacacaggtcatagcagacaaccatctgacagcagtgttgacagatttttgtcaaaa
gatgaaactgtggagccgggtgatcatgaaaataagccttctagaataaaaggagatatc
ggacactttactgatgctgatttgccacctctagtccattgtgttcggttgttatctgct
tcctttttgctgactggagaaaaaggtgcattagttccagatagagaggtaagggtaagt
gtgaaggctttggcagtaagttgtgttggagcagctgtggcccttcatccagaatctttc
ttcagcaaactttacaaaacgcctcttgagaccatggagcaccccgaggatcagtatgtt
tcagatattttgaactatattgatcatggagacccacagattcgaggagctactgctatc
ctttgtgggaccattatctattccattcttaataaatctcgtttcagtgtggaaaactgg
ttagcagttgtcaggagttcaacaggtaataccttttcactagtagactgcatcccttta
ttgcagaaaactttgaaagatgagtcttctgttacctgcaagctggcttgcactgctgtg
aagcattgtgtcatgagtttatgcaacagttgctatagtgaattaggattacaattgatc
attgatgtcttgactctgagaaatagttcctactggttggtaagaacagaacttttggaa
actcttgcagaaattgactttaggttagtgagctttttggaggcaagagcagaccattta
cacaagggatctcatcattatactgggcttttaaaactgcaggatcgagtgctcaataat
gttgtcatctacttacttggagatgaagatccccgggtgaggcatgttgctgcatcttca
ttaataaggcttgttccaaagttattttataattgtgaccaaggacagaccgatccagtt
gtggcagtggcaagggaccaaagcagtgtttacctgaaacttctaatgcatgagactcag
cctccctctcacttttcagtcagcactatcacaagaatatacagaggctacaacttgcta
ccaaacataactgatgtaactatggagaataatctttctagagttattgcagcagtttcg
catgccctgacaatatcaactacacgagcacttacatttggctgttgtgaagctttgtgt
attctttctactgcctttccagtctgcatttggagtctagggtggcattgtggggttcct
gtagcgagtccctcagatgactcgaggaagagctgtacagttggaatggctacaaccatt
cttaccctgttgtcctcagcctggtttcccctggatttgtcagcacatcaagatgcgatc
attttagctgggaatttgcttgcagctagtgcccccaaatctttgaaaagtccatggact
acagaagatgaaaccaatccaggagctatgaaacaagaagagccatggccagctttggca
gatagaacattggttacaatggtagagcagctcttctctcatttgctgaaagccattaac
atctgtgcccatgttttggatgatgttactcctgggccagcaataaaggcagccttacca
tctctaaccaacccaccttctttaagtccaatccgtcggaaaggaaaagaaaaagaatca
ggagagcagactgtaccattgagtcccaaaaaaggcaatgaagctagtccagcttctagg
tcttctgatccctctggtcctgccataacaagtaaatcatcatcattgggaagtttctat
catcttccttcttatctcaagttatatgacgttctaaaagctacacatgctaattataag
gttacattggatcttcagaatagcaatgaaaaatttggggggtttcttcgggctgccttg
gatgtcctttcacagattcttgaactagcaactctgcaggatattggcaagtgtgttgaa
gaaatcttgggatacctgaaatcctgtttcaatcgagaacctacaatggctactgtttgt
gttcaacagttgttgaagactctgtttgggacaaatctggcatcacagtatgatggctta
tcatccaaacccagcaaatctcaaggaaaagcccagcgtttgggttcttctagtttgcgt
cctggcctttatcattattgcttcatggcaccatatacacattttacacaggccttggct
gatgctagtttgaggaatatggtccaggcagaacaagaacatgatacttctgggtggttt
gatgtgctccagaaagtgtctacgcagttgaaaaccaatcttacaaatgtaacaaaacac
cgtgcagataagaatgctattcacaatcatattcgtttgtttgagcctcttgtcatcaag
gctttaaaacagtacaccacaacaacatctgtgcaattgcagaggcaggttctagattta
ctggcgcaactggttcaattacgagttaactactgtcttctggattctgatcaggtgttt
attggatttgtgttaaagcagtttgaatacattgaagttggccagtttagggaatcagag
gcaattattccgaacatctttttcttcttagtattgttgtcttatgagcgctatcactca
aagcagatcattggaattcctaaaatcattcaactttgtgatggcatcatggccagtggg
cgaaaagctgtaacacacgccataccagctctgcagcccatagttcatgatctctttgta
ttaagaggaacaaacaaagcagatgctggaaaagagctcgagacacaaaaagaggtggct
gtgtccatgttattaagacttattcagtaccatcaggtattagagatgttcatcctggtc
ctacagcagtgtcacaaggagaatgaagacaaatggaagagattatctcgacaagtagct
gacatcattctcccaatgttagcaaaacaacagatgcatattgattctcatgaagccctt
ggagtattgaacactttatttgaaatattagctccttcatccctccgtcctgttgacatg
cttttacgaagtatgtttattactcccaatacaatggcatcagtgagtactgttcaattg
tggatatcaggcatcttagctattctgagagtgcttatatcccagtcaactgaagacatt
gttctttcccggattcaggaactctctttttctccttatttaatctcatgtcaagtaatt
aaaaaattaagagatggaggtagtagcttgccaacaccagatgatcaaagtgaagtgaaa
caagtcaaatgtttgccagaagaaacattttctagattccttttacagctggtgggcatt
cttctggaggatattgtcacaaagcagcttaaagtggagatgactgaacaacagcacacg
ttctattgccaagaactgggcaccctgctgatgtgcctgatacacatcttcaagtcagga
atgttcaggagaatcactgcagctgcaactagactctttacaggagatggttctgatggc
agtttttataccttggaaagcctgagtgaactggtccggtctatgattcctacacatcct
tctttagtgctcctgtggtgtcagattctcctccttgtcaactataccaactataactgg
tggtccgaagtgcatcagacaccaaaaaggcacagtctttccagtacaaagctcctcagc
cctcagatgtctagtgatggcgaggattcccacgtggcatctacacttggcgtgtgcaat
agagaaatagtacgaagaggcgcactcattcttttctgtgattatgtttgtcagaacctt
tatgattcagaacatttaacttggcttattgtgaatcatattcaagatttgatcagtctc
tcccatgagcctccagtacaagactttattagtgcagtccacaggaattcagctgctagt
ggacttttcatccaggccattcagtctcgctgtgaaaacctttcatctccaacaacgctg
aagaagaccctgcagtgcttagagggcattcatctcagccagtcgggggctgtgctcatg
ttgtatgtggacaagcttttgtgtacgccattccgcgtgctggctcgaatggtagacacg
cttgcttgtcggcgagtagaaatgcttttggctgccaatttacagaatagcatgtcacag
ttacctgtggaagagctgaatagaattcaagagtatcttcaaaaaagtggattagctcag
agacatcaaagactctattccctgctggacaggtttcgtcgtacagtagcaccagagaca
gctagtccttctcctgtagtcacttcacaccccctggatggggaaaatcatttatcacta
gagatgataaatccagaccaagactggtatgtatctctggttaaatctcagtgttgcact
aagtcagactcagcactgctggaaggtgcagagctggtaaataggattcctccagatgaa
ctggcccccttcatgatgagtaaggagttcaacttatccctcttagctccttgtttaagt
cttggcatccgtgagatctctagtggtcagaaaagcagcctatttgagacagcccggtca
gtgaccctggaccgtgtggccagcctggtgaaggagcttccacccaaccatcatgttttt
gagcctcttttacccattgagacttcagcctattggaatcaactaagtgatctctttgga
aatgctgtgatttatcactcaattactacactggcctgtgcccttgctcagtacttagta
ctcttttctaagttaccaagtcatcttcaacttccccctgagaaagagagtgatgttcta
aaatttgtcgttgtggcacttgaggccctatcttggcacttaatacatgaacagatgcca
ttaagtatggatctacaggcagttctggattgttgctgtctaactttgcatctacctggt
ctttggaatatgttgtcatcaatagagtatgtcacccacgtgtgttccctaatacactgt
attcgttttattctagaagcaattgcagttcaacctggagaccaacttcttagtccagaa
agaaggaagaatactccaagaggaatcagtgaagatgaagttgattcagatgtgcaagtt
cccaagtatattaccactgcttgtgaaatgatcgcagaaatggtggcagcattacagact
gtgttggctttgggtcacaagagaaacagtggaattccagctttccttactcctgtactg
aaaaacattatcatcagccttgctaggctgccactggtcaatagctatactagagtgcct
ccgttggtatggaaattaggatggtcacctaaacccggaggagattttggcacaacactt
cctgaaatacctgtagaatttcttcaagaaaaggagatctttaaagagttcatctatcgt
attaataccttaggttggacaagtcgtacgcagtttgaagaaacctgggctactctcctt
ggtgtccttgtaactcagcctattgtgatggatcaggaagaaagtcaacaggaagaagat
actgagaggacccagatcaatgttcttgcagttcaagctatcacatccttggtgctgagt
gcaatgacccttcctgtcgcaggcaatcccgctgtgagctgtttggagcaacagccccgg
aacaaagcccttaaagccctggatacaaggtttgggaggaaactgagtgttattagggga
attgttgaacaagaaattcaagcaatggtttcaaagagagacaacattcccacacatcac
ttgtaccaggcttgggatcctgtcccatctctgtctccagctatgtcaggtactcttatc
agccatgaaaaacttctgctgcagatcaacactgaacgagaaatggggaacatgagttat
aatctaggacaggtctctatacactctgtgtggctgggaaataatattaccccattgaga
gaagaagaatgggatgaagatgaagaagatgagagtgatcttcctgccccttcttcaccc
ccaacatctccaataaactccaggaaacaccgggctggagttgatatacattcttgttcg
cagtttttgcttgaattatacagtcagtggatactcccttcaagttcagccaaaagaacc
ccagtcattttgatcagtgaagtagtgagatctctcctggcagtctcagacttgtttacg
gagaggaatcaatttgaaatgatgtacttaacactgacagagcttcgaagggtgcatcct
tctgaagatgaaatcctccttcagtatttagtaccagctacttgtaaagcagctgctgtt
ctgggaatggataaagctgtggcggagccagtgagcagactgttggagaccacactccga
agcacccatttgccaagcaagattggagcactgcatggcatcctctatgtgctcgaatgt
gacttacttgatgaaacagcaaagcagctcattccaattatcagtgattacctcctttct
aatctgagaggaattgctcattgtgtgaatctgcacagccagcagcatgtcctggtgacc
tgtgctgctgccttctaccttatggagaattatcccctggatgtaggcccagagttttct
gctgcagtgatacagatgtgtggggtgatgctctctgccagtgaagaatccactccagcc
attatttatcattgtgtcctgagaggtttggaacgacttcttctttcagagcagctctcc
aggctggatggagaatccttagttaaactcagcgttgaccgagtgaatgtgcacagtcct
caccgagccatggcagccctgggcttgatgttaacttgcatgtacacagggaaggagaaa
ataagccctggcagaccctccgatcccaaccccactgccccagacagtgagtcggttatt
gttgcaatggagcgggtatctgttctctttgataggatcaggaaaggatttccctgtgaa
gccagagtggtggcacggatcctgcctcagtttctagatgattttttccctccccaggat
gtaatgaataaagttattggagaatttctgtcaaaccagcagccatacccacaattcatg
gcaactgttgtatataaggtgtttcagacgttgcacaccacaggacaatcatctatggtc
cgagactgggtgatgctctccctctcaaacttcactcagaggaccccagtggcaatggct
atgtggagtctctcctgctttttcgtcagtgcttccactagtcagtgggtctcagcaatc
cttccgcacatcatcagcaggatggggaagtcggaacaagtggacattaatcttttctgt
ctggtggccatagacttttacagacatcaaatagatgaggagctagatcggagggccttt
cagtctgtgtttgaggtggtagcatctccaggaaatccctaccaccgactgctgacttgt
ttgcaaaatgtccacaagattgcaacatgttga
DBGET
integrated database retrieval system
