Antechinus flavipes (yellow-footed antechinus): 127541002
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Entry
127541002 CDS
T08818
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127541002
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
afz04990
]
127541002
Domain-containing proteins not elsewhere classified [BR:
afz04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
127541002
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
Calsarcin
PDZ_6
PDZ_2
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
127541002
NCBI-ProteinID:
XP_051821999
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Position
6:complement(180757166..180968732)
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AA seq
1250 aa
AA seq
DB search
MGTGEFVCISMTGGAPWGFRLHGGKEQNHPLQVAKIRGKSKASRSGLQEGDEVVSINGTP
CADLTYSEVIKLMESITDSLQILIKRPSSGINETYIPETENKDHDHLVHEDHVESTSLHI
WPHCTQAQRASPGQKDESNPDFSGETKPSSQIVSHPLRRPWAEPIALGETEEGRLGAVVE
LQLSLSPDRHKDPGALVGTVPGGAENHPSPDPYPNQLQGGLGHGTSAFSDEKEDSGQRPR
DKLLQLSSGRELQGTQGREAGAPHLSRAEVIISYSYDREKAEGSNWAGRKGCGDFQVEGG
RAEAPPSVVSFPISSEGIEQGEDQQISERDHRRPHKHRARHARFRRSESLSEKQVKEAKS
KCKSIALLLTNALNPNSKGVLMFKKRRRRAKKYTLVSYGTGELQREADTEEESEKDGVVE
VKFTSESEVDEEIVSDADDEEAPVWTPAWNSGLVDAEKKLKSGDKMQMLPDSSGKGVLMF
AKRRERMDQITAQQEEVKAEGVARREFEDGQADGLRTVTSYQTREEESVRMQSNLCKSYL
EGGHIAQQNGFSGAPELPEAHRLTASNRTAKPFPGSVNQTAVPFSPTRNLASPLYDFPAP
PPYSAVTPPPEILSRGATSPLAAPAQPPPWPQPAPWAQQAFYEPTEQIASRDERIAVPAK
RTGILQEARRRGTSKPMFTFKETPKVSPNPELLSLVQNAEGKKGTGAGFESGPEEDYLSL
GAEACNFMQGHSSKQKTPPPVAPKPSAKPSPSQPVTPISPVWSPSTAAPSQPPAFPVSNQ
AQGINASAIKIARPASTTYQPPSTPNVAGPFKGPQAAVASVNYAPKATPAGNATPVSGTG
PSSELPQMSGKGAQLFAKRQSRMEKYVVDSEKVQAHMARAQSPTPSLPASWKYSSNVRAP
PPVAYNPIHSPAYPPAAIKQQSGASAASKPTKKKGKKPLNALDVMKHQPYQLNASLFTFQ
PPDAKDGPVPKPLAKHSPVPVLKPASPSSQPVNASSPTTFRASSVCSVPAYSSQPTFHSE
AAATPVSPSPVPIGLPTSPKPDSAPATYFVAPRPKFSAKKSGVTVQDGGQSLPHFGRPVA
TTTSPSSLMFQPSYINPSKPAGEPAKVNKRLTPWEAAAKSPFGLVDDAFGPRNIQESIMA
NVVSAAHRKSFPEPFEDWKPRISYAPQAQKTNLGPLYRRENGIIPNLPKNTRAISYANSQ
YDAPLPYFTYYGKPSRTGFERMTMETKSEYGLSFSDGNYNPHPRGWKRET
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccggggagtttgtctgcatctccatgaccggaggggctccctggggcttccgc
ctgcacggtggcaaggagcagaaccatcctctacaagtggccaagattcgtggcaagagc
aaagcctcaaggtctggtttacaagaaggggatgaagtggtctctatcaatggcacccca
tgtgcagatctcacctactcagaagtcatcaaacttatggaaagcatcactgattctctc
caaatacttatcaaaagaccatcaagtggaataaatgagacctatatccctgagactgaa
aacaaagatcatgaccaccttgtacatgaggaccatgtggagagtaccagtctacatatt
tggccccactgcacccaagcccagagggcatctcctggccagaaagatgaaagcaaccct
gatttttcaggagaaaccaagccaagctctcaaatagtttcgcaccccctgagaagaccc
tgggctgagccaatagccttgggggagacagaagaaggcaggctgggagctgtagtggaa
ttgcaattgtccctctcacctgacagacacaaggaccctggggctttggtggggactgtt
ccgggaggagctgaaaaccatccctcccctgacccttaccctaaccagttgcagggaggg
cttggccacggaacgtctgccttctctgatgagaaagaggattccggtcagaggcccaga
gacaagctacttcagctctctagtggcagagagttacaaggcacccaggggagagaggcg
ggagcccctcatctctccagagctgaagtcatcatcagttactcctacgacagagagaag
gcagaagggtccaactgggcaggaagaaaggggtgtggtgattttcaagtggaaggaggg
cgggctgaagcacctccttctgtggtctcctttccgatctcctcggaaggcattgagcag
ggagaagatcagcagatctcagaaagggatcaccgacggccccacaagcaccgagctcgg
cacgcccggttcaggaggagcgaaagcttgtccgagaaacaggtgaaagaagccaagtcc
aagtgtaagagcattgccctcctccttacaaatgccctcaaccccaactccaagggggtt
ttgatgtttaagaaacgccgccggagggcgaagaagtataccttggtcagttacggcacc
ggagagcttcagcgggaagcagacaccgaagaagaaagcgaaaaagacggggttgtggaa
gtcaaattcacgagcgagtcggaggtggatgaagagatcgtctcggacgctgacgacgaa
gaagccccggtgtggaccccggcctggaactctggcctggtagacgctgagaagaagctg
aaaagtggagacaagatgcagatgctgccagacagctcggggaagggcgtcctcatgttt
gccaagaggagggagaggatggaccagatcacagctcagcaagaggaggtgaaggcagag
ggagtggcccgccgggagttcgaggatggccaagcagatgggctgagaacagtcacttcc
taccagacgagagaagaagaaagcgtgaggatgcagagcaacttgtgtaaaagctacctt
gaaggaggccacatagctcaacaaaatggtttcagtggagccccggagctgccagaggct
cacagattgaccgcctccaacaggacggctaagcccttcccaggatcggtaaaccagacg
gccgtgccattttccccaaccagaaacctagcaagtcctctatatgactttcctgctcca
cccccttactcggccgtcacccctcctccggaaatattgtccagaggggcgaccagccct
ttagctgccccggcccaaccacctccatggccccagccagccccgtgggcccagcaggct
ttctacgagccaaccgaacagatcgcttcccgggatgagagaattgccgttccagccaag
agaacgggcatattgcaggaggccaggcggaggggcacctcgaagcccatgtttaccttc
aaagagacgcccaaggtcagccctaaccctgaactgttgtcacttgtgcaaaatgcagag
ggcaagaaaggcaccggggccgggtttgagtcgggacccgaagaagactacctcagcctt
ggagcagaggcttgcaatttcatgcaaggccactcttcgaagcagaagaccccacctccc
gtggctcctaaaccctcggccaaaccctctccttctcagccagtcactcccatctctcca
gtctggtctccatcgactgcagctcctagccaacctcctgcgttccctgtctcaaaccag
gcccagggaatcaacgcatctgccattaaaatagctcgacctgcttcgaccacttaccag
cccccaagcactccgaatgtggcgggtcccttcaaaggaccccaagcagcggtggccagt
gtcaactacgcacccaaggctacacctgcaggaaacgctacgccagtctctgggacggga
ccatccagcgaattgccacaaatgagcggtaaaggggcccagctctttgccaagaggcag
tctcggatggagaagtacgtggtagactcagaaaaagtacaggctcacatggcgcgggct
cagtctccgactccatctttaccagcttcttggaaatattcctccaatgttcgagcccct
ccacctgtcgcttacaatccaatccactctccagcctaccctccagctgcaatcaagcaa
cagtctggagcttcagcggcctccaaaccaaccaagaaaaaggggaagaagcctctcaat
gctttagatgtcatgaaacaccaaccctatcagctcaatgcgtctctctttactttccaa
cctccagatgccaaggacggccctgtcccaaagccactggccaagcacagtccagtccca
gtcttgaagccggcttctccttcctcacagccagtcaatgctagctcacccaccaccttc
cgagcttcctccgtgtgctctgtgccagcctacagttctcaacctaccttccattcggag
gctgctgccacaccagttagcccgtccccggtgcccataggcctacccacctctcccaag
cccgattccgctcccgcaacttacttcgtggctccgaggcccaagttttcagccaagaaa
agcggtgtcacagttcaggatggcggacaatccttaccacattttggaagacctgttgca
accaccacatctcccagttctttgatgttccaaccttcctatattaatcctagcaaacca
gccggtgagcctgctaaagtcaacaagagactcacaccttgggaagcagctgctaagtca
ccctttggccttgtggatgatgcctttggccccagaaacatccaggaatccatcatggcc
aatgtagtctctgctgcccataggaaaagctttccagagccatttgaggactggaaacca
agaatttcctatgcaccccaggctcagaaaacaaacctgggtccactctacaggagggag
aatggcatcatccccaatctgccaaaaaacaccagggcaatatcttatgccaacagccag
tatgatgccccattgccatatttcacctactatgggaagccctctaggactgggtttgaa
agaatgaccatggagaccaagtctgagtatggcctctccttcagtgatgggaactacaat
ccacatccaagaggatggaagcgtgagacctga
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