KEGG   Antechinus flavipes (yellow-footed antechinus): 127542515
Entry
127542515         CDS       T08818                                 
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
  KO
K13175  THO complex subunit 6
Organism
afz  Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03013  Nucleocytoplasmic transport
afz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:afz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127542515
  09122 Translation
   03013 Nucleocytoplasmic transport
    127542515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:afz03019]
    127542515
   03041 Spliceosome [BR:afz03041]
    127542515
Messenger RNA biogenesis [BR:afz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     127542515
Spliceosome [BR:afz03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    127542515
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR36-Utp21_2nd WDR55 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_EML Beta-prop_EML_2 Beta-prop_WDR3_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 EIF3I NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_IP5PC_F WDR54 Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_NUP159_NUP214 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_VPS8 WD40_RFWD3 Beta-prop_SCAP Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 127542515
NCBI-ProteinID: XP_051824132
LinkDB
Position
1:complement(334242126..334245735)
AA seq 329 aa
MEVQRALERLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSEAKEESKKPVVTFV
AHDGPVYSLVSTDRHLLSAGDGEVKAWLWGEIIKKGCKEVWSRHPPYRSSLEVPEINALL
LNPKENSLLLAGGDCQLHTMDLETGTFTRALRGHTDYIHCLALRERSPEVLSGSEDGSVR
LWDLRTGEEVQTIEVYKHEECARPQNGKWIGCLATDSDWMVCGGGPALTLWHLRSATPTT
VFPLRAPQKHVTFYQDLILSAGQGPCVNQWQLSGELKAQVPGSSPSLLSLSLNQQPAAPE
CKVLTAAGNSCRVDVFTNLGYRAFSLSFS
NT seq 990 nt   +upstreamnt  +downstreamnt
atggaggtacaacgcgccctggagcggctgcacatgaccatcttctcccaaagtgtttcc
ccctgtggcaagttcttagccgcagggaacaactacggacagattgccatctttagttta
tcagctgctttgagctcagaagccaaagaggaaagtaagaagccagtggtgacctttgta
gcccatgatggccctgtgtacagcctggtctcaacagatcgccatctgctcagtgcaggg
gatggtgaagtgaaggcctggctttggggggagatcatcaagaagggctgtaaggaagtg
tggagcagacatcccccgtacaggagcagcctggaagttcctgaaatcaatgctttgctg
cttaaccccaaggagaattccctcctcttggcagggggtgattgccaacttcatactatg
gatctggaaactggaacatttacgcgtgcacttcgaggtcacactgattatattcattgt
ctggctcttcgggaaagaagtcctgaagtgttatctgggagtgaagatggcagtgttcgt
ctttgggatcttcgtacgggtgaggaggtccagactattgaagtttacaagcatgaggag
tgtgctcgaccccagaatgggaagtggattggatgtttagctactgactcagattggatg
gtatgtggagggggcccagctcttactctttggcaccttcgatctgccacacccacaaca
gtgtttccacttagagccccacagaaacatgtaaccttctatcaagatctgatcctctca
gcaggacaaggaccttgtgtgaaccagtggcagctgagtggggagctgaaggcacaggta
cctggctcctctcccagtctgcttagtttaagccttaatcagcaacctgctgcaccagag
tgcaaggttctgacagctgcaggaaatagctgtagagttgatgtcttcactaaccttgga
taccgggctttttccttatctttctcctga

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