Antechinus flavipes (yellow-footed antechinus): 127542800
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Entry
127542800 CDS
T08818
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03013
Nucleocytoplasmic transport
afz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127542800
09122 Translation
03013 Nucleocytoplasmic transport
127542800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127542800
03041 Spliceosome [BR:
afz03041
]
127542800
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
127542800
Spliceosome [BR:
afz03041
]
Complex C
Other components
EJC/TREX
127542800
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127542800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
127542800
NCBI-ProteinID:
XP_051824571
LinkDB
All DBs
Position
X:51023023..51106390
Genome browser
AA seq
1663 aa
AA seq
DB search
MPCGRRSPLTLSPSLYIRAPAPRERKMAAATTSGPTSVVPNEWIKNWDKVGKLEFVQLCR
ALCENKTREHLIFRDLQQVIYELSYHVIRGNLKHDQASNVLNDIIDYREDMPSILADVFC
ILDIETSCLEEKSKRDHFTQLVLSCLYLVSDTILKERLDPETLESLGLIKQSQQFNQKSV
KIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGSMTSDLILENIKSLIGCFNLDPNR
VLDVILEVYECRPEYDEFFVPLIESYMCMCEPQTLCHILGFKFKFYQEPNGETPASLYRV
AAILLQYDLIDLDDLYVHLLPVDNTILDEHKQEIVEAKQIVRKLTMVVLSSEKMDERDKE
KEKEEEKTDKPPDNQKLGLLEALLKISDWQHAQNIMDQMPPFYASSHRPIAIALCQLIHV
TVDPLYRRVGVPKGAKGSTVALSQNQRAPKQAESFEDMRKEVFNMLCHLGPHLSHDPILF
AKVVRLGKAFMKEFQVDGNKPEEKERMETLLSCLLTITDQVLLPSLSLMDCNACMSEELW
GMFKSFPYQYRYRLYGQWKNETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIG
KLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEALANPEKERMK
HDDTTISSWLQSLASFCGAVFRKYPIELAGLLQYVANQLKAGKSFDLLILKEVVQKMAGI
EITEEITMEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQ
RNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLASNLSTEDYIKRVPSIDVLCNEFHT
PHDAAFFLSRPMYAHHISSKYDELKKAEKGSKQQHKVHKYITSCELVMAPVHEAVVSLHL
PKVWDDISPQFYATFWSLTMYDLAVPRNSYEREVNKLKIQMKAVDDNQEMPPNKKKKEKE
RCTALQDKLLEEEKKQIEHVQRVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPRCIFS
AIDAVYCARFVELVHQQKTLNFSTLLCYDRVFSDIIYTVASCTENEGSRYGRFLCCMLET
VTRWHSDRTIYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASV
HCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALERRVHKICQEEKEKRPDLYALAMGY
SGQLKSRKPYMIPENEFHHKDPPPRNAVAATVQNGPGGVGLSTSLTINAAKLEESTTEET
DKVKEKSQGAVKIASKAASTTPKATTSNGNSASNSKVTKESEKEKSGKEKDREKKEKTPA
ATPEAKALGKDGKEKPKEERANKDDKSKEIKEKTPKSDKEKEKFKKDEKSSKDEKFKTVV
TNTESKSSVEKDRDKEPSRERDVAKETKSKENVKGGEKIPVAGSLKSPVPRSETSESERE
QKRRKLDSHSSPSHSSTVKIYSQKRSSWFVSRLQPYFQVSRDSENYSSSPVISIHFLQDN
LSELKESSTKHYINHTTPVLSKSKEREMEKKDLDKLRERSREREKKEDKDRKDRKREHSN
NDREAPQDSSTKRRKEENGTTGASKHSKSESPSDSPRSNEKDKNKSKSSGKEKGSDAIKM
DKMEKSSSGSKKDSRHDKEKTEKKEKRDSTGGKEEKKQYPVCV
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atgccttgtgggcggcgctcccctttgaccctctctccctcactatacatccgggctcca
gctcctcgagagaggaagatggcggcggcgacgacgagcggaccgacttcggtggttccc
aacgagtggataaaaaactgggacaaagtgggcaagctcgaatttgtgcagctatgccga
gccctctgtgaaaataaaacccgtgaacacttgattttcagagatctgcagcaagttatc
tatgaactatcatatcatgtcataagaggaaatctaaagcatgatcaagcatcaaatgtt
cttaatgatataattgactatcgtgaggatatgccttccatcctagctgatgtattctgc
atcttagatattgagacaagttgtttagaagaaaaaagcaagagagaccattttacacag
ctggtgttatcctgtttgtatttagtttcagacacaatcttaaaggagcgtttggatcca
gaaacattggaatctttagggcttattaagcagtctcaacaattcaatcaaaaatcagtt
aaaatcaagacgaaacttttttataagcagcaaaaattcaatctcttaagagaagagaac
gaaggttatgcaaaactgattgcagaattgggacaggatttgtctggaagtatgactagt
gacttaatcttagaaaatatcaaatctttaataggatgctttaatctggacccgaacaga
gtcctggatgtcattttagaagtttatgaatgcagaccagaatatgatgagttttttgta
cctttaatagaatcctatatgtgtatgtgtgagcctcaaacgctgtgtcatattctagga
ttcaaattcaagttttatcaggaaccaaatggagagacgccagcatctttatatagagta
gcagcaatacttctgcagtatgatcttattgatttagacgatctttatgttcatcttctt
ccagtggataataccattcttgatgagcacaaacaagaaattgtggaagccaagcaaatt
gttagaaaacttaccatggttgtcttgtcctctgaaaagatggacgagagagacaaagaa
aaggaaaaagaggaggagaaaacagataagccacctgacaaccagaaacttggcttattg
gaagctctgttaaagattagtgattggcaacatgcacaaaacattatggatcagatgccc
ccattctatgcttcttctcacaggccgatagccattgctctttgccagcttattcatgta
actgttgaccccctttaccgaagagttggagtacctaaaggtgctaaaggatcaactgtt
gctctgtcacaaaaccagcgagcgccaaaacaggcagagagttttgaagatatgagaaaa
gaagtattcaatatgctctgtcatcttggccctcacctttctcacgatcccattttattt
gcaaaagtggtacgcttggggaaagcttttatgaaagagtttcaggttgatggaaacaaa
ccagaagaaaaagagagaatggaaactttgcttagttgcttgctgactattactgaccag
gtgctacttccttctctttccttgatggattgcaatgcttgtatgtctgaagaactatgg
ggaatgtttaagtcatttccttatcaatataggtatcgcctgtatggtcagtggaagaat
gaaacttataacagtcacccgcttttggtaaaagttaaagctcaaacgatagacagagcc
aaatatataatgaagcgattgacaaaggaaaacgtgaagccttctggaagacaaattggg
aaattgagtcacagcaatccaaccattttgtttgattatattttatcacaaatacaaaag
tatgataatttaataacaccagtagttgattcattgaagtacctcacttcattgaactat
gacgtgttggcctattgcatcattgaagctttggctaatccggagaaagaaagaatgaaa
catgatgatacaactatctcaagctggcttcaaagcttagctagtttttgtggtgcagtt
tttcgtaaatatccaattgaacttgctggtcttcttcagtatgtggcaaatcaattaaaa
gctggaaaaagctttgacctacttattttgaaagaggtagtacaaaaaatggcaggaatt
gaaattactgaagaaataacaatggaacaattagaggccatgaccggtggggaacaactt
aaagctgagggtggctattttggacagatcagaaacactaaaaaatcctctcagaggtta
aaggatgcgttgttggaccatgatcttgcccttcctctatgcttacttatggctcagcag
agaaatggtgtaatctttcaggaaggaggagagaaacacttaaagcttgtgggaaaatta
tatgaccagtgtcatgataccctggtacagtttggtggatttttagcatctaatctaagc
acagaggattatataaagagagtgccttcaattgatgtgctttgcaatgagttccataca
cctcatgatgcagcatttttcctttctaggcctatgtatgcacaccatatatcatcaaag
tatgatgagcttaaaaaagctgagaagggaagtaagcagcaacataaagttcataaatat
atcacatcgtgtgagttagtgatggctccagtccatgaggcagtggtctctttgcatttg
ccaaaagtgtgggatgacatcagcccccaattctatgccacattttggtcattgacaatg
tatgaccttgcagttccacggaatagctatgaaagagaagtcaacaaactgaaaatccag
atgaaagcagttgatgataatcaggaaatgcctccaaataaaaagaaaaaggagaaggaa
cggtgtactgcccttcaggacaaacttcttgaagaagagaagaaacagatagaacatgtc
cagagagttctgcagagattaaaattggaaaaagacaactggcttttagcaaaatctaca
aaaaatgaaactatcacaaaatttctgcaactgtgtatatttcctcgctgcattttttca
gcaattgatgcggtttactgtgctcgttttgtagaattggtacatcagcagaaaacactt
aatttttccacacttttgtgttatgaccgagttttctctgacataatttacacagtagca
agctgtactgaaaatgaaggtagtcgctatggaagatttctctgctgcatgttagaaact
gtgactaggtggcacagtgatagaacaatatatgaaaaggaatgtggtaactatccaggt
ttccttactattttacgggcaactggatttgacggtggaaacaaagctgatcagttagac
tatgagaattttcgacatgttgtacacaagtggcattataaactaacaaaggcatcagtg
cattgccttgaaacgggtgaatatactcatatcaggaacattctcattgtactgaccaaa
atacttccatggtatcctaaagttttgaacctgggccaggctttggaacgaagagtccat
aaaatctgtcaagaagagaaagagaagagacctgacttatatgcattggctatgggctat
tctgggcagttgaaaagtagaaagccatacatgatacctgaaaatgaattccaccacaaa
gatcctcccccaaggaatgctgttgctgccactgtacaaaatgggcccggtggtgttggc
ctatctacatcactcacaataaatgcagctaaattggaagaaagcactactgaggagact
gataaagtaaaggagaagtctcagggtgctgtgaaaattgctagtaaagctgccagtaca
acacctaaagcgactacaagtaatggaaacagtgcttctaatagcaaagttactaaagaa
agtgaaaaagagaaaagcgggaaagaaaaagacagagaaaaaaaagaaaagactccagct
gccactccagaggccaaggcacttggtaaagatggcaaagaaaaaccaaaggaagaacgg
gcaaataaagatgacaaatctaaagagatcaaggaaaaaacacccaagtctgacaaggag
aaggaaaaattcaagaaggatgaaaaatcgtctaaagatgaaaaattcaagacagttgtt
accaacactgaatcaaagtcaagtgtagaaaaggatagagacaaggaaccatccagagag
agagatgtagcgaaggaaacgaaatccaaggaaaatgttaaaggaggagaaaagatacca
gttgctgggtccttgaagtcacctgttccccgatcagaaacatcagagtctgaaagggaa
caaaaacgccgcaaacttgatagccactcttctccatcacattcctcaacagtaaagatt
tattcccagaaaaggagtagctggtttgtttcaaggttacaaccatacttccaagtttct
cgggattctgagaactattccagctcacctgtcatctccattcattttctacaggacaac
ctcagcgagctcaaggagtcttccacaaagcactacattaatcacactactccagtactg
tccaagagtaaggagagagaaatggaaaagaaagatttggacaagttaagggaaagatcc
agagagagagagaagaaagaggacaaggacaggaaagatcgaaaaagggagcattcaaac
aatgaccgtgaagcaccccaggactcctccaccaagaggcgtaaagaggaaaatggaaca
actggtgcttcaaaacatagtaaaagtgaaagtccatcagattctcctcgttcaaatgag
aaggacaaaaacaaatctaaatcttcaggcaaagaaaaaggcagcgatgccattaaaatg
gacaaaatggagaaaagctcttctggtagtaaaaaggactctcgacatgataaggaaaaa
acagagaaaaaagagaaacgggacagtacaggaggaaaggaggaaaagaagcaatatcct
gtatgtgtttaa
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integrated database retrieval system
