Antechinus flavipes (yellow-footed antechinus): 127544336
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Entry
127544336 CDS
T08818
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03015
mRNA surveillance pathway
afz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127544336
09123 Folding, sorting and degradation
03018 RNA degradation
127544336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127544336
03041 Spliceosome [BR:
afz03041
]
127544336
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127544336
mRNA cycle factors
Stress granule specific factors
127544336
Spliceosome [BR:
afz03041
]
Complex C
Other components
Complex C specific factors
127544336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
127544336
NCBI-ProteinID:
XP_051826894
LinkDB
All DBs
Position
1:complement(586044951..586059926)
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPPSGYFMAAIPQTQNRAAY
YPASQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRV
ANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQ
EPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccctatggcctcgctctacgtgggggatctgcacccc
gatgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccctgggctacgcctatgtcaacttccag
cagccggcggacgctgaacgggcattggatacaatgaattttgatgtcattaagggcaag
ccagtgcgtatcatgtggtctcaacgtgatccatcactacgtaaaagtggtgtgggcaat
atattcatcaaaaatttggataaatccattgataataaagcattgtatgatacattttct
gcttttggaaacatcctttcttgtaaggtggtatgtgatgaaaatgggtcaaagggctat
ggatttgtacactttgagacacaggaagctgctgaaagagctattgaaaaaatgaatgga
atgcttcttaatgatcgaaaagtctttgtcggtcgatttaagtcccgtaaagaaagagaa
gcagaacttggagctagagcaaaagagttcaccaatgtttacatcaaaaattttggtgag
gacatggatgatgaaagacttaaggagctctttggcaagtttggacctgctttaagtgta
aaagtaatgactgatgaaagtggaaaatccaaaggttttggctttgtgagctttgaaaga
catgaagatgcacaaaaagctgtagatgaaatgaacgggaaagaactaaatggaaaacaa
atttatgttggccgagctcagaaaaaagtggaaagacagacagaactcaagcgcaaattt
gaacaaatgaaacaggataggatcaccagataccagggtgttaacctatatgtgaaaaat
cttgatgatggtattgatgatgagcgtctgagaaaagaattctcaccatttggtacaatc
actagtgcaaaggtgatgatggaaggtggccgcagcaaagggtttgggtttgtatgtttc
tcttcgccggaggaagccaccaaagcagtcacagaaatgaatggcagaattgttgccact
aagccattgtatgtagctttagcccagcgcaaagaggagcggcaggctcacctcacaaac
cagtatatgcagagaatggcgagcgtcagagctgtgcccaaccctgtaatcaacccctat
cagcctccttcaggttacttcatggcagctattcctcagactcagaaccgtgctgcatac
tatcctgctagccaaattgctcaactcagaccaagtcctcgctggactgctcagggtgcc
agacctcatccattccagaatatgcccggtgctatccgcccagcagctcctaggccgcca
tttagtacaatgagaccagcttcttcacaggttccacgagtcatgtcaacacaacgtgtt
gcaaacacatcaactcagacaatgggtccacgtcctgcagctgctgcagctgcagctact
cctgctgtccgcacagttccacaatataagtatgctgcaggtgttcgcaatcctcaacag
catcttaatgcacaaccacaggttaccatgcagcagcctgctgttcatgtgcaaggtcag
gaacctttaactgcttccatgttggcatccgcccctcctcaagagcaaaagcagatgttg
ggtgaacggctgtttccactcattcaggccatgcaccctaccctggctggtaaaatcact
ggcatgttgctagaaattgacaactctgagcttcttcatatgcttgagtctcccgagtct
ctccgctctaaggttgatgaagctgtagctgtactgcaagctcaccaagctaaagaagct
gcccagaaagcagttaacagtgccactggtgttccaactgtttaa
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