Antechinus flavipes (yellow-footed antechinus): 127545328
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Entry
127545328 CDS
T08818
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127545328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127545328
03041 Spliceosome [BR:
afz03041
]
127545328
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127545328
Spliceosome [BR:
afz03041
]
Complex B
Other components
Prp19-related factors
127545328
Complex C
127545328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
Suf
TPR_8
TPR_19
TPR_15
TPR_16
ARM_TT21
TPR_MalT
ARM_TT21_C
TPR_1
TPR_NPHP3
NRDE-2
Motif
Other DBs
NCBI-GeneID:
127545328
NCBI-ProteinID:
XP_051828492
LinkDB
All DBs
Position
1:680327224..680338082
Genome browser
AA seq
942 aa
AA seq
DB search
MCDHWLEPKAGCWSLLALEVQSGSKRRWCPASSPSPEQAEVVLRKGTEVGCSWPMRNSAR
TDGGGITVLRLVTTAREEAGMPEIGDAVPAEAKLKTRPERPDLFFEEEDLQYEEEILRNP
FSVKCWFRYIEFKQSASQAVLNLLYERALKELPGSYKLWYHYLKARRAQVKRRCVTDPAY
EDVNNCHERALVFMHKMPRLWLDYCQFLMEQGRITRTRRTFDRALRALPITQHSRIWPLY
LRFVRSHPLPETAVRVYRRFLKLSPESAEEYIEYLRSIDRLDEAAQRLATVVNDERFVSK
EGKSNYQLWHELCDLISQNPDKVQSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHF
EKARDVYEEAIQTVMTVRDFTQVFDSYAQFEESMIAAKMETTSELGREEEDDVDLELRLA
RFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREVINTYTEAVQTVDPFKATG
KPHTLWVAFAKFYEDNGQLDDARTILEKATKVNFKQVEDLASVWCEYGEMELRHDNYDQA
LRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYERILD
LRIATPQIVINYAMFLEEHSYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRK
LERARDLFEQALDGCPPKYAKTLYLLYARLEEEWGLARHAMAVYERATRAVEPSQQHEMF
NIYIKRAAEIYGVTHTRSIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCS
QICDPRTTGTFWQTWKDFEIRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVYSNA
TGTVSDLAPGQSGMDDMKLLEHRAEQLAAEAERDQPSRSQGKILFVRSDASRSELAELAQ
QANPEEIEIGEEEEEEEDLQPNEVSLEQQSVPSTVFGSLKED
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgatcattggttagaacccaaggctggatgctggagcctattggccctagaggtc
caaagcggaagcaagaggaggtggtgtcccgcctcttctcctagtccagagcaggcggaa
gttgttttgaggaagggcacggaagtgggttgcagctggccaatgaggaacagcgctagg
acggatggaggcgggatcacagtgttaaggctagtgactacagcccgggaagaagcgggg
atgcccgagatcggggatgcagtcccagctgaggcaaagctgaagactagacctgagaga
cccgacctcttcttcgaagaggaagatttgcagtatgaggaggaaatccttcgcaatcct
ttctccgtcaagtgttggtttcggtatatcgagttcaagcagagcgcatcgcaggctgtg
ctcaatctgctctatgagcgagccctcaaggagcttcctgggagttacaagctttggtat
cactacctgaaagcccgccgggcccaggtgaagcgtcgctgtgtgactgaccctgcctat
gaggatgtcaacaactgccatgagcgggctttggtcttcatgcacaagatgccgcgtctg
tggttggattactgccagttcttgatggagcaaggtcgtattactcggacccggcgcact
tttgaccgtgctctgagagctctgcccatcactcagcactcgcgcatctggcccctctat
cttcgatttgtacgttcccaccctctgcctgagactgcagtgcgtgtgtaccgccgcttc
ctcaagctgagccccgagagtgctgaggaatatatcgagtatctacgatccattgaccgg
ctggacgaggcagctcagcgcctggcaaccgtggtcaatgacgaacgatttgtgtccaag
gaaggaaagtccaactaccagctgtggcatgaactgtgtgacctgatctcccaaaatcct
gacaaagtgcagtccttaaatgtgggcgccatcatccgagggggtctcacgcgcttcact
gaccagctcggcaagctctggtgctccctggctgactactacatccgaagtggacacttt
gagaaggcccgtgacgtgtatgaggaagcaatccagacagtgatgaccgtacgagacttt
acccaggtgtttgacagctatgcccagtttgaggagagcatgattgcagccaagatggag
acaacttctgagctggggcgagaggaagaagatgacgtggacctggagctacgtttggcg
cgctttgagcagcttatcagccgccggcccctcctcctcaacagtgtcctgctacgccag
aacccacaccatgtgcatgagtggcacaagcgagtggccctgcatcagggccgacccaga
gaggtcatcaacacatacactgaggccgtacagaccgtggatcccttcaaggccacaggc
aaaccccacacactgtgggtcgcctttgccaagttctatgaggataacgggcagctggat
gatgcccgcaccatcctggagaaagccaccaaggtgaacttcaaacaggtggaggatttg
gccagtgtctggtgtgagtacggcgagatggagctcaggcacgacaactatgaccaggcc
ctgcggctgctgcggaaggcgactgccctgcctgcccgccgggccgagtactttgacggt
tctgagcctgtgcagaatcgggtctacaagtccttgaaggtgtggtctatgctggctgac
ctggaggagagtctgggcaccttccagtccaccaaggccgtgtacgagcggatcctggat
ctgcgcattgccaccccccagatcgtcatcaattatgccatgttcctggaggagcacagt
tactttgaagagagcttcaaggcctacgagcggggtatctcactttttaagtggcccaat
gtgtcggacatctggagcacatacctgaccaagtttattgctcgttatggaggccgcaag
ctggagcgggcccgggacctgttcgaacaagcgctggatggctgcccccccaaatacgcc
aaaactctctacctgttgtatgcccggctggaggaagagtgggggctggcccgccatgcc
atggcagtgtacgagcgggccacccgcgccgtggagccctcccagcagcacgaaatgttc
aacatctacatcaaacgcgccgccgagatctatggggtcacccacacccgcagcatctac
cagaaagccatcgaggtgttgtcggacgagcacgcacgagaaatgtgtcttcgctttgct
gatatggagtgtaaactgggggagatcgaccgggcccgggccatctacagcttctgctca
cagatctgcgatcctcggacgacaggaacgttctggcagacgtggaaggacttcgagatc
cggcacgggaacgaggacaccatccgtgagatgctccggatccggcgcagcgtccaggcc
acgtacaacacacaggtcaacttcatggcctcccagatgctgaaggtgtacagcaacgcc
acaggcaccgtgtccgacctcgcccctggacagagcgggatggacgacatgaagctgctg
gagcaccgggccgagcagctggcggccgaggcggagcgggaccagccctcgcgctcccag
ggcaagatcctctttgtcaggagtgacgcctcccgctcggagctggccgaactggcccag
caggccaaccctgaggagattgagataggggaggaggaagaggaagaggaggacctgcag
cccaatgaggtgtcgctggagcagcagagcgtgccgtccaccgtctttgggagcctcaag
gaagactga
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