Antechinus flavipes (yellow-footed antechinus): 127549278
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Entry
127549278 CDS
T08818
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz04140
Autophagy - animal
afz04148
Efferocytosis
afz05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127549278
04148 Efferocytosis
127549278
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
127549278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afz04131
]
127549278
Membrane trafficking [BR:
afz04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
127549278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Hira
DUF4145
Motif
Other DBs
NCBI-GeneID:
127549278
NCBI-ProteinID:
XP_051833103
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Position
2:complement(275236840..275299276)
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AA seq
886 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDIVPTDVASLESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCKNSICVG
FKRDYYLIRVDGKGSTKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGNCTQKCA
LNWTDIPISMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSDIVYVASN
HFVWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTEYRKQLQYPNPLPVLSGAELEKAHLALIDYL
TQKRNQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLQTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLVFSYSIWVLRDFPEDGLKIFTEDLPEVEALPRDRVLNFLIENFKGLA
IPYLEHIIHIWEETGSEFHNCLIRLYCEKVQGLMKEYLSSFPTDKTPVPAGNEEGELGEY
RQKLLMFLEISSCYDPSQLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAE
EYCHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMELLEPQANLQAALQVLELHHS
KLDTTKAINLLPANTQINEIRIFLEKVLEENAQKKRFNQVLKNLLQAEFLRVQEERIFHQ
QVKCIITEEKLCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPTDT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgctttcgagcctgtgccgatcctggagaagctgccgctgcagatcgactgt
ctggcggcctgggaggaatggcttcttgtgggaaccaagcaaggtcatctccttctctat
agaattcggaaggatattgtaccaacagatgtggcatccctggaaagtggcagttgcaac
agattcgaagtgactctagaaaaatccaacaagaacttctccaaaaagattcaacagatc
cacgtggtttcccagtttaaaattctggtcagtttgttagaaaataatatttatgttcat
gacctattgacatttcaacaaattactactgtttcaaaagcaaaaggggcatctctgttt
acctgtgacctccagcacactgaaacaggggaggaggtgcttcggatgtgtgtggctgtg
aagaagaaactccagctctatttctggaaggacagagagtttcatgaattgcagggggac
tttagtgtaccagatgtacccaagtccatggcatggtgtaaaaattccatttgcgtgggg
ttcaagagagactactatctaataagggtggatggaaaagggtccaccaaagagctcttt
ccaacagggaaacaactggagcccttggtggcacctctggcagatggaaaagtagctgtt
ggtcaagatgatctcactgtggtgctgaatgaagagggcaactgtacacagaagtgtgcc
ctgaattggacagatataccaatttccatggagcatcagcctccatatatcattgcggtg
ttgcctcggtatgtggagatccggacatttgagcctcggctgctggtgcagagcattgag
ttacagagaccccgcttcattacctcaggaggttccgacattgtctacgtggccagcaac
catttcgtctggcggctcatccctgtctctatagcgacccaaatccagcagcttcttcag
gacaagcagtttgaactggccctgcagctggcggaaatgaaagatgattctgacagtgag
aagcgacaacagatccatcacattaagaacctgtttgcttttaacctcttctgtcagaaa
cgtttcgatgagtccatgcaagtctttgcaaaacttggcacagatcctacccacgtgatg
ggtttgtatcctgatctgctacccactgaatacaggaagcagctacagtatcccaacccg
ttaccagtgctctctggggctgaactggagaaggctcatttggctctaattgattatctg
actcagaaaagaaaccagctggtgaagaagctcaatgactctgaccatcaatcgagcacc
tcccccctaatggagggtacccccacaatcaagtccaaaaaaaagcttctgcagatcata
gacaccaccctgctcaagtgctacctccagacaaacgtggccttggtggctcctttgctg
cgtctggagaacaatcattgccacattgaagaaagtgaacatgtgttgaagaaggctcat
aagtacagtgagctgatcatcctctatgagaagaaggggcttcatgagaaagctttgcag
gtgctagtggaccagtctaagaaagccaactcccccctgaaaggccatgagaggacagtg
caatatcttcagcatcttggcacagagaacttgcatttggtgttttcctattctatttgg
gtgctgagggacttcccagaagatgggctaaaaatatttactgaagatctccctgaagtg
gaggctctaccacgagaccgtgtgctaaacttcttaatagaaaactttaagggcttggct
attccctatttggaacacattatccatatctgggaagagacaggttctgagttccacaac
tgccttatccggctgtactgtgagaaggtccaaggactgatgaaggaatacctcagctct
ttccctacagataagactccagttcctgctggtaatgaggagggggagctgggagaatac
cggcagaagcttctaatgttcttggaaatctccagctgctatgacccaagccagctcatc
tgtgacttcccttttgatggtctcctagaggaaagagctctccttttggggcgaatgggg
aaacatgaacaagccctcttcatttatgtccacattctgaaggatacaaggatggctgaa
gaatactgtcataaacactatgatcgaaacaaagatggcaacaaagatgtatatctttct
ctgcttcgaatgtatctgtccccaccaagtgttcactgcttgggaccaatcaagatggaa
ttgctggagccccaagctaatctccaggctgccctgcaggttctggaattacatcacagc
aaactagacactaccaaggccatcaatcttcttccagcaaacactcaaattaatgagata
cgcatctttctggaaaaggtcctggaagaaaatgcacaaaagaaacgtttcaatcaagtc
ctcaaaaatcttcttcaggcagagttcttaagggtccaggaggaacgcattttccaccag
caagtaaagtgtatcatcacagaggagaagttgtgcatggtgtgtaagaagaagataggg
aacagcgcatttgccaggtaccctaatggagtggttgtacactacttctgttccaaagag
gtcaacccgactgacacctga
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