Antechinus flavipes (yellow-footed antechinus): 127550250
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Entry
127550250 CDS
T08818
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03013
Nucleocytoplasmic transport
afz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127550250
09122 Translation
03013 Nucleocytoplasmic transport
127550250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127550250
03041 Spliceosome [BR:
afz03041
]
127550250
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
127550250
Spliceosome [BR:
afz03041
]
Complex C
Other components
EJC/TREX
127550250
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127550250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_EML_2
WD40
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
ANAPC4_WD40
WDR55
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_Aladin
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_Vps41
DSE1_N
Beta-prop_WDR36-Utp21_1st
eIF2A
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_WDR35_TULP_N
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
RMC1_N
NBCH_WD40
WDR90_beta-prop_4th
Tricorn_2nd
Beta-prop_ACSF4
Beta-prop_EIPR1
PD40
TRM82_WD
B-prop_COPA_B_2nd
Beta-prop_WDR75_1st
PAC11
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
ASA1
Beta-prop_Nup120_160
Beta-prop_NWD2_C
Peptidase_S9_N
Cytochrom_D1
YNCE
Beta-prop_WDR11_1st
PROPPIN
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
127550250
NCBI-ProteinID:
XP_051834943
LinkDB
All DBs
Position
2:complement(433508826..433518418)
Genome browser
AA seq
428 aa
AA seq
DB search
MRIFLRRRFLAPSEAVVGLDECACASSPGGTSFASLSLWRLSGGSALACLRPCLHCDAWV
AVGFCSPGRAARLSVPGMASASALAGSSALGLGAVGGPGPWGSSTGGPSRYVAGMQELFR
SHSKTREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVD
QLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDD
VVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAH
PSNCICIKFDPTGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLAS
ASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVK
LFGLPNDS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatttttttgaggcggcggttcctcgctccttccgaagcggtggttgggctagat
gaatgcgcttgcgcgtcttcccctggaggaaccagctttgcttctctctccctctggcgg
ttgagcggagggagtgcgcttgcgtgtctccgcccctgcctccactgcgacgcgtgggtg
gcggttggtttctgctctcctgggcgcgcggcccggctttctgtgcccgggatggctagc
gcctcagccctcgcggggagctctgctttggggttgggtgctgtcgggggccccgggcct
tggggcagctcgaccgggggcccgtcccgctatgtggccgggatgcaggagctgtttcgg
agccacagcaagacacgcgagttcccggcgcacagcgccaaggtgcactcggtggcctgg
agctgtgacgggcgccgcttggcttcgggctccttcgacaagacggccagcgtcttcttg
ctcgagaaggaccgcctggtaaaagaaaataactatcgaggacatggggacagcgtggat
cagctttgttggcatccaagtaatccagacctctttgtcactgcatctggggacaaaact
attcgcatctgggatgttagaactacaaaatgcatcgctactgtgaatactaaaggagag
aatattaacatttgctggagtcctgatgggcagaccattgctgtgggcaacaaagatgat
gtggtaactttcattgatgctaaaacccaccgttcaaaagcagaggaacagtttaaattt
gaagtaaatgaaatctcctggaataatgataacaatatgttcttcctgacaaatggcaat
ggttgtatcaacattctcagctatcctgagttgaagcctgtgcaatccatcaatgcccat
ccttccaattgcatctgtatcaaatttgaccccactgggaaatactttgccacaggaagt
gctgatgcattggttagcctttgggatgttgatgaattagtgtgtgtgagatgtttttcc
agattggattggccagtgagaacccttagctttagccatgatgggaagatgcttgcatca
gcatctgaagatcactttattgacattgctgaagtagaaacaggtgataagctctgggag
gtgcagtgtgagtccccaacattcacggtggcttggcatcccaaaagacctttgctggca
tttgcttgtgatgacaaagatggcaaatatgacagcagccgggaagcagggactgtgaag
ttatttggacttcctaatgactcttaa
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