Antechinus flavipes (yellow-footed antechinus): 127550872
Help
Entry
127550872 CDS
T08818
Name
(RefSeq) nucleoporin NUP188 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03013
Nucleocytoplasmic transport
afz05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127550872
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
127550872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127550872
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127550872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
127550872
NCBI-ProteinID:
XP_051836104
LinkDB
All DBs
Position
2:499883436..499926477
Genome browser
AA seq
1746 aa
AA seq
DB search
MAAAAGGLCVRSSRELWTILLGRSALRELNQIESELNKHWQRLLEGLSYYKPPSASSAEK
VKANKDVAPPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQA
LILKIADYYYEERTCILRCVLHLLTYFQDERHPYRVEYSECVDKLEKELVTKYRQQFEEL
YKTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMVPGDLLLLTKMFK
AQGFGCRQTNRHLVDESMDPFVDRIGYFSALILVEGMDIDSLHKCALDDRTELHQFAQDG
LVCQNMDHLMLTLGDIPHHAPVLLAWALLRHTLNPEETSSVIRRMGSTAIQLNVFQYLTR
LLRSLASGGNNCTTSTACMCVYGLLSFVLTSLELHTLGNQQDVIDTACEVLADPSLPELF
WGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELYKH
RPHDVISHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRL
TTVISPPVDVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVAHPVSNMSQMISAEGMNA
GGYGNLLMNSEQPQGEYGVTIAFLRLITTLVKGQLGSTQSQGLAPCIMFVLKEMLPSYHK
WRYNAHGVREQIGCLILELIHAILNLCHESDIHNSHSPSLQSLCICSLANTEAGQAVINI
MGIGVDTIDMVMAAQPRCDGAEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQA
LTQHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDA
FLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQ
VVLELIDSKQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGT
LSPPSETSEPSVLETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSSEKRFAYWSGYIK
SLADHMAETEGSGCTSLVEYQMLISAWRMLLIIATSHADIMHLNDSVVRRHLFLDVLAGT
KALLLVPTSVNCLRLGSMLCTLLLILLRQWTRDLGSVDEILSSLMEILEGILQADQQLME
KAKAKVFSALLTVLQMKELKVSDITQYSQLVLNVCETLQEEVIALFDQTRHSLASGSVSE
DKDSMETDDYSRLRHKDQRDGQVCVLGLHLAKELCEVDEDGDSWLQVTRRIPILPTLFTT
LEVSLRMKQNLHFTEASLHLLFTLARTQQGAAAVAGAGITQSICLPLLSVYQLSTNGTVQ
TPGASRKSFDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRT
VQSLACLEEADHTVGFILQLSNFMKEWQFHLPQLLRDIQVNLCYLCQACTSLLHSRKMLQ
HYLQNKNGSDAMPSAVTPRVQRPSQPMSSKQPNPDGEAAEQKALRMVQYSLLKILSKTLA
ALRHFTPDVCQILLDQSLDLAEYNILFALSFTTPTFDSDVAPSFGTLLATVNVALNMLGE
LDKKKEPLSQAVGLSTQVEGIRTLKSLLMFTMENCFYLLISQAVRYLRDPAVHPRDKQRM
KQELSSELSTLLSSLSRYFRRGAPTSPAAGVLPSPQGKPASTSKAGPESQEPLIQLVQAF
VQHVQR
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccgccggcgggctctgtgtgaggagcagtagagaactgtggaccattctg
cttggaagatcagctcttagagagctaaatcagatcgagtcagagttgaataaacactgg
cagcggctgctagagggactttcatactacaaacctcccagtgcaagttcagcagaaaaa
gtgaaagctaataaagatgtggctccaccactgaaggagctggggttgaggatcagcaaa
tttttgggccttgatgaagagcagagtgtgcagttacttcagtgttaccttcaagaggac
tatagagggacccgggactcactaaagacagtactgcaagatgagagacagagccaggct
ctaatactgaagattgcagattattactatgaagagaggacctgtattctacgttgtgta
ttacatttactcacttatttccaggatgagaggcatccctacagggttgagtactctgaa
tgtgttgataaattggagaaggagctagtcaccaagtaccggcaacagtttgaggagctc
tacaaaacagaagcgccaacatgggaaacacatggaaatctcatgactgagcgtcaagtg
tcccgatggtttgttcaatgcctgagggagcagtcaatgctgctggaaataattttcctt
tattatgcctactttgagatggttcctggtgacctgctgctattaactaagatgttcaaa
gcacaagggtttgggtgtaggcagaccaatagacatttggtggatgaaagcatggatcct
tttgtggatcggattggctatttcagtgcccttatcctggtagagggaatggatattgac
tcattacataaatgtgctttggatgataggacagagctccatcaatttgcccaggatggg
cttgtatgtcagaatatggaccacctgatgttgaccttaggagacatccctcatcatgcc
cctgtgcttttggcttgggctttactccgtcacaccttaaatccagaagaaacaagtagt
gtcatcaggaggatgggtagcacagccatccagctcaatgtattccagtacctgacacgg
ctgctccgatcactagccagtggaggaaataattgtacaaccagtactgcttgcatgtgt
gtctatggactgctttcttttgttctcacctcactggagttacacactttaggcaaccag
caagatgtcattgatacagcatgtgaagttctagcagacccttctcttccagaactcttt
tggggaacggaaccaacttctgggctagggatcatcctggacagtgtgtgtggaatgttc
ccccatctcctctctcctcttttgcagttgctcagagctcttgtgtcagggaaatccaca
gccaaaaaggtatatagtttcctggataaaatgtctttctacaatgagctttataaacat
aggcctcatgatgtgatctcacatgaagatgggaccctctggcggaggcagacaccaaaa
ctcctttaccctcttgggggtcagactaatcttcgtatacctcagggcacagtaggtcag
gtaatgctggatgaccgtgcttacctagtgcgctgggaatactcctacagcagctggact
ctgttcacttgtgagattgaaatgctactgcatgttgtatcaacagcagatgtaattcag
cactgccagcgggtcaaacctatcattgacctggttcacaaagtcatcagcactgatttg
tccatagctgattgtctcctgccaatcacatcacgaatctacatgttactgcagaggtta
acaactgtgatctctcctcctgtggatgtcattgcttcctgtgtcaattgtttaacggta
ttagctgcccggaatccagctaaagtctggactgatcttcgccacacagggtttctgcca
tttgtagcccatccagtctccaatatgagtcagatgattagtgctgagggaatgaatgca
gggggctatggaaacctcttgatgaatagtgagcagccacagggtgaatatggtgttacc
attgcctttttgcgtttaatcaccactcttgtcaagggacagcttggtagcacccagagc
caagggctggccccttgcatcatgtttgtgttgaaggagatgcttcccagctatcataag
tggcgttacaatgcccatggagtgagagagcaaattggctgtctgatccttgagctgatc
catgcaattctgaatctgtgccatgagtctgacattcacaacagccattcccctagttta
cagtctctgtgcatctgcagcctggccaacaccgaagctggccaagcagtcatcaacatc
atgggcattggtgtagataccattgacatggtgatggcagctcagcccagatgtgatggg
gcagagggccaggggcaaggccagctacttattaagactgtgaaactggcattctcagtg
accaataatgtcattagactgaaacctccttctaatgtggtatctcccctggaacaggca
ctcactcaacatggtgcccatgggaacaaccttattgctgttttggccaaatacatttat
cataaacatgaccctgccttgccacgacttgccatccagctactgaaacgtttggcaacg
gttgccccgatgtctgtgtatgcttgcctcggcagcgatgcagctgctatccgggatgcc
tttctgaccaggctgcaaagcaagattgaggatatgcgtatcaaagtcatgatcttagag
tttcttactgttgctgtggagacccaacctggactcattgagctctttctgaatcttgaa
gtaaaggatgggagtgatggctccaaggaattcagtcttggggaatggagctgtctccag
gtagtacttgagttaattgattcaaaacagcaagatagatattggtgtccacccctgcta
caccgtgctgcgatagcttttctacatgctctatggcaggaccgccgggacagtgccatg
ctggttctcaggaccaaaccaaagttttgggagaatttgaccagcccattatttgggact
ctttctcctccctcagaaacatccgagcccagtgtcctggagacctgtgccttaattatg
aagatcatttgtttggaaatatattatgtagttaagggttcactggaccagtccctaaaa
gacacactcaagaaattctccagtgagaaacgttttgcctattggtcaggttatatcaaa
tctttggcagatcacatggcagagacagaaggaagtggctgcacctctctggtggagtac
cagatgttgatctctgcctggcggatgcttctcattattgccaccagtcatgcagatata
atgcatttgaatgattctgttgttcgacgtcacttatttcttgatgttcttgctgggact
aaagctttattgctggtcccaacatcagtgaactgcctgaggctgggatccatgctatgt
actctgctgcttatcttgcttcgacagtggacgagagatttgggttctgtggatgaaatc
cttagctccttgatggagattctagagggaatcctacaggcagaccagcagctgatggaa
aaggctaaggccaaagtgttctcagccctccttactgtcctccagatgaaagaattgaaa
gtgagtgatatcacacaatactcccagctggtgctaaatgtctgtgagacccttcaggaa
gaagtgattgccctctttgaccagacccgtcacagcctggcctctggcagtgtgtcagag
gacaaggacagcatggagacagatgactactcacggcttcggcacaaggaccagcgggat
gggcaggtatgtgttctgggcctacacttggccaaagagttatgtgaagtggatgaggat
ggagactcttggcttcaggttacccgtaggatccctattctgcctactctgttcaccacc
ctggaggtgagcctgagaatgaagcaaaacctgcactttactgaagcctcgctgcacctt
ctgtttaccttggcccgaacccagcagggtgcagcagctgtggctggagctggcattacc
cagagcatctgcttgccccttttaagtgtgtaccaactcagcaccaatggaacagtacag
actcctggtgcctctcgaaagtcctttgatgccccttcttggcctggagtctaccgcctg
tccatgtccttgatggaacgtctgctcaaaaccctacgttataatttcctgactgaagcc
ctggactttgtgggtgttcatcaagagcgaattctgcagtgcctcaatgcagtaaggaca
gtgcagagtttggcctgtctagaggaagctgatcacactgtaggctttatcctgcagctc
tccaacttcatgaaggagtggcaatttcatctgccacagctcctgagagacatacaggta
aacctgtgttacctctgtcaggcttgcacctccctcctgcacagccgcaagatgctgcag
cactatttacagaacaaaaatggaagcgacgccatgccttcagctgtgactcctcgagtc
caacgcccctcccagcccatgtcctcgaagcagcctaatcccgatggtgaggctgctgaa
caaaaggctctgcgcatggtccagtatagcctcctgaaaattctcagcaagacgctggct
gccctgcgtcacttcacccctgatgtctgccagatccttttggaccagtccctagatctt
gctgaatacaatatcctttttgccttgagcttcacaaccccaaccttcgactctgatgtg
gctccctcttttgggactctcctagccacagtgaatgtggccctcaatatgttgggagag
ttggacaagaaaaaggaacccctgtcccaggctgtggggctgagcacacaggtggagggg
atcagaacactgaagtccctcttgatgtttacgatggaaaattgcttctacctgctgatc
tcccaggctgtacgctacctgagggacccagccgtgcaccccagggacaaacaacgaatg
aagcaggagctcagctcagaattgagtacattgctctccagcctttcccgttactttcgc
cgtggagcccccacttccccagctgctggagtccttccttctcctcaaggcaagccagcc
tcaacttccaaagcaggccctgaaagccaggaacctctgattcagctagtccaggccttt
gtccagcacgtacagagatag
DBGET
integrated database retrieval system
